RNA id: XM_021618973.2


Basic Information

Item Value
RNA id XM_021618973.2
length 3136
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110534238
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 51457096 ~ 51559902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctgtcccttTGTTCCTCAGCAATGGGTTATATACCAGGATTATATAATGCACCGCCTCCATATTGACTGCCAGTAGAGTGTGTAGCTCACTAGCGAGCAGTGTAGTGCCCAACTAGCAAAAAAAGCTTTCTCTATAAAAGGACAGTAGACTTCTGTAGCTAACTGAATTCCACACACAGCATTCTTcacacagcagcagcagtgttctAAGTCAAGCCATGCCACCAGTAAAGCTTGAGGTATCAGATGCGACCATCACACCGTCTAGTGATGCCAAGCCAAAGGAGCTCAATAAGTGTAACCAGCTAGAGCTGAAGGGTCTGGAGTCTATCGCCCCTCTGGTGCGGTCCGTGGAGGAGACCCCAGAGCCCATCGCCACAGAGGTGTGTGGGACCATCCCAACCTGGATCCGAGGCAGCCTCCTCCGCAATGGCCCAGGGAAGTTTGAGTTCGGAAACCAACACTACAACCACTGGTTTGATGGGATGGCCATGCTGCACCAGTTTAAGATTGAGGATGGCAAGGTGACCTATAGGAGTCGCTTCCTGCAGAGTGATGCTTACAAGAAGAACAGCGAGAGGAACCGCATCATGGTGTCAGAGTTTGGCACAGTGGCCATGCCCGACCCCTGCAAGAACTTCTTCCTGCGTTTCCTCTCTCGCTTCGAGATGATAGAGGCAACGGACAACGCCAGTGTTAGTTTTGTAAAGTACAAGGGAGACTGTTTTGTCAGCACTGAGACCAACTACATGTACAGGGTGGACCCAGAGAGCCTGGAGACACAGAATAAGGTGGATTGGACAAAGTTTATTGCTGTGAATATGGCCACTGCGCATCCCCACACTGAACCAGACGGCACTACGTACAACATGGGCAACTCATATGGCAGAAAAGGTGCCTTGTATAACATAATCAAAGTGCCCCCTATGAAGAACAACCCTGAGGAAACCCTGGAGGGGGCTAAAGTGCTGTGCTCTATTGTCCCTGCAGACAAGGCCAGGCCCTCCTACTACCACAGCTTCGCAATGTCGGAGAACTATGTCGTGTTCATAGAGCAGCCTATCAAGATGGACCTAATGAAGATTGTCACAGCTAAACTGAGGGGAAAGGGAATCAGTGAGGGGGTCTACTGGGACCCCAAACAAGATACTGTCTTTCACCTGGTAGACAAACACACGGGACAGACCAGCTCAGTAAAGTTCCACACCAAGGCTCTGTCAGTGTTCCACCAGATCAATGCTTATGAGGAGGACGGCTTCCTGATGCTGGACATGTGTTGCTCTGATAATGGAGAGGCAATCAACAACTACCTCATCCAGAACCTACGCAAGTCAGGGGAGGCTCTCGATCAGGTCTACAACACCATGTACAGAGCGTTCCCCCGGCGCTTTGTTCTGCCCCTCAATGTGACCAACGACACACCGACAGGTGTGAACCTCAACACACGTCCCGCCAGCTCTGCCACTTCTTTCAAAACAGCTAAAGATAAGGTGGTGTGCCAGTTTGAGGATCTCCATGGAGAGGACCTTTATGAGTACGGAGGCCTGGAGTTCCCCCAGATCAACTACAGCAAGTTCAACACGCGGCCCTATCGCTACTTCTACGGCTGTGGCTTTAGGCACCTGGTGGGAGACTCACTCCTCAAGATTGACCTGGAGGGAAAGAAAGTCAAGgTGTGGTACCAGAAGGGTTTGTTTCCCTCAGAGCCTGTTTTCGTTCCCTCGCCGGACGCCGTGGAGGAGGACGATGGGGTCATCCTGTCCGTGGTGGTCACGCCCACTGAGGATAAGAGTACATTCCTCCTGGTTCTGAATGCAAAGACATGGGAGGAGCTGGGGAGAGCCGAGGTGCCTGTCAATATTCCCTACGGTTTCCATGGTACCTTCAACCCCACTGCCTAGATCAGCATTACTGACCTAACAATCACCCaagccttcctccctccctccctcagattattttgtgaccaatagaaattaatggtaaataatgtagtgtTTCATgatggagtcacttttattgtaaatcagaatataatatgtttctaatcACTTCTACGTTACATGTtaaaatgtggatgctaccatgattacagataatcctgaataaattgtgaataatgatgagtgagaaagttagatgcaGAAAtagcataccccccccccccccccccccaaaaaaaaatataaCCTCCTCTGTTTTTGTAATGGTGAGAGTCTTTTGTGTGTCTTTTgtgtgtctgtaactttctcacttgTCATTATTTACGAATCATTCAGGATTTTCCATTTTCACGGTAGCATCCACAATAATGTACAATGGAAGTGTTTAGCAGCATTCTATTGTTATTtccaataaaagtgactccaaaatgaccatacattatttaccattcaagtcaaggggtctgaatacgctgtatacacacattttaaatatacattttacacACATGGTACTTTTTTATAGAGCAATcacatattaataataataataatacattaccaaacaCAAGCTCTTTAATCACACATGAATTTTGAACCTTTATCATCGCATATTATCCACAGATTGTAagctaaagatgaaaacctttcctatGTTAATacttatattattgattgattgacaatgGCCTTCCTAATTGCCCAACACTGCTCTTTGTAAGGTTAATGTTAAGTCAATGTTGCTACTGTACATAGGGGCAATACCATAATAAATGATCTCTTCGCAGAAAAATCTACAGTgctgagattgttgtatgcccTAAATATATAGCATGAAATTGgtggcaagaattttgtataataattttaaTTGAAAAAGTCAGTCTTGAATCAAATTTAGTTTTTTGTATCAGTTCATATAACATGTttcatggaatcggtacatcgaaaatctcttcccatttattttgcaacctcTATGGCGCAGGGTCAACATTTTTGCCCTCAAATGAAGctggtatatttttctatttatgccaATCATTTTCTGCCAATTTTGTATCTTTAGTATATGGCAGACAAACAAGTTCCAAACATTCCCCCTCTTCCCTTTGCCCTTGGTAATGCTGCAATCAATTGGTTGTAACTTTGCATTGAGCAGACATTCCCATATATTTTTGATAGTGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1024666 lncRNA downstream 1759 51454833 ~ 51455337 (-) True G900805
TU1024679 lncRNA downstream 37519 51419238 ~ 51419577 (-) True G900817
TU1024678 lncRNA downstream 38260 51418616 ~ 51418836 (-) True G900816
TU1024675 lncRNA downstream 40928 51415967 ~ 51416168 (-) True G900813
TU1024671 lncRNA downstream 45276 51411339 ~ 51411820 (-) True G900809
TU1024782 lncRNA upstream 35205 51595043 ~ 51595578 (-) True G900920
TU1024820 lncRNA upstream 98608 51658446 ~ 51658682 (-) True G900956
TU1024892 lncRNA upstream 199328 51759166 ~ 51766002 (-) True G901027
TU1025022 lncRNA upstream 284122 51843960 ~ 51853430 (-) True G901153
TU1025060 lncRNA upstream 342870 51902708 ~ 51902970 (-) True G901191
XM_036933331.1 mRNA downstream 494910 50953168 ~ 50962186 (-) True si:ch211-215c18.3
XM_036933332.1 mRNA downstream 495154 50953168 ~ 50961942 (-) False si:ch211-215c18.3
XR_002475100.2 mRNA downstream 689276 50736163 ~ 50767820 (-) False LOC110534228
XR_002475099.2 mRNA downstream 689321 50721690 ~ 50767775 (-) False LOC110534228
XM_036933327.1 mRNA downstream 820048 50626130 ~ 50637048 (-) False slc25a15b
XM_021618975.2 mRNA upstream 38789 51598627 ~ 51656987 (-) True LOC110534240
XM_021618976.2 mRNA upstream 529993 52089831 ~ 52124329 (-) True adamts15a
XM_021618985.2 mRNA upstream 716493 52276331 ~ 52281912 (-) True atf5a
XM_036933347.1 mRNA upstream 752362 52312200 ~ 52368206 (-) False phldb1a
XM_036933350.1 mRNA upstream 752362 52312200 ~ 52368206 (-) False phldb1a
TU1024669 other downstream 1154 51455500 ~ 51455942 (-) True G900807
TU1023888 other downstream 475346 50970763 ~ 50981750 (-) False G900070
TU1023889 other downstream 475346 50970763 ~ 50981750 (-) True G900070
TU1023530 other downstream 706863 50743158 ~ 50750233 (-) True G899739
TU1023512 other downstream 735493 50720986 ~ 50721603 (-) True G899727
TU1026566 other upstream 1342356 52902194 ~ 52928402 (-) False G902519
TU1027855 other upstream 2312401 53872239 ~ 53878789 (-) True casp3a
TU1027862 other upstream 2319706 53879544 ~ 53883773 (-) True G903619
TU1027952 other upstream 2522328 54082166 ~ 54103405 (-) False cfap97
TU1029404 other upstream 3719661 55279499 ~ 55280341 (-) True G904991

Expression Profile