RNA id: XM_021619292.2



Basic Information


Item Value
RNA id XM_021619292.2
length 1118
RNA type mRNA
GC content 0.50
exon number 6
gene id si:dkey-9i23.4
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 61649733 ~ 61659500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTGGGCATCTGTATCTGTAAGGACGGGGTGAGaattacagggaggaggtgagattaCATTTGCTATTAAAAGAAGGGAATaccaaatgagagagagagagagagagagcgggagagagagagagggagaagcaacCTAGTCCACACTCTGGAAACGCAGAATCAGAGGAAGCCAAGATGAAGTTTGTCAGCCTGATTGTGATGATGTCACTACTTGGGACAAAAATGGCTTTGACATTCCACAGAAGTACCGGTGGGGATGAAGCTCCAGTGTATCTCCAGGAGGAGACCGCAGAGTGTGACATGCCCAAAGCCTGTGACCTGAAGAATTATGAAGACTGGTACAGGCTGGGCTCCTACTGCATCAAGTACTTCAAGGCTGCCCTCAACTTCACCGAAGCGGAGACACAGTGCAGGTCTGCTGCCCCCGGTGGCCACCTGGTGTCGGTGCATAACTGTCAAGCCAACGACAACCTGCTTTGCGTGGTGATGAAGAACAACGCCAAAAACCCTCGCATCTGGCTGGGAGGCTTCGAACTCTTCCAGTCTGGTAAGTTTGTGTGGACTGACGGCTCCAGCTGGAACTTTGAAGCATGGACCCCTGGGGAGCCCATCTCCCGCTGGGGGAGCCGCGAGGACTGTGTGGAGATGAACTGGAGCGAAATTGGGAAATGGAACGACCACACGTGTTTCACCAAGAAGAGCTACGTGTGCTCCTTCAAGAACAGAGTTTGAGGACAAATATCCACGCTCACATACTTAGTATGAAGCAGCAATGTATTGGGCATGCTTTCTCCAGTGGTGTGTTGGTatagactgtgtgtctgtctgtgtaacaCCAACCcagtcccctgctcctctctcttggGTTGTGACcgaaatgacaccctgttccctatagagtgcaccacttttgaccagagccccacgggccccctggtcaaagtagtgcactataaaggatagggtgtcattttggactCCTCCTGCTCCTTTCCCCAATGACCCCAACCCACAGATCTCCCACGGTGAAACCAAACCACATAGAGATGTGCCTGCTTTTAGCAAACTGAAAAatgcattaaaaaatatatataaataaagagTGTTAAGCAAGT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1036780 lncRNA upstream 23460 61626072 ~ 61626279 (+) True G911642
TU1036777 lncRNA upstream 23897 61618538 ~ 61625842 (+) True G911640
TU1036748 lncRNA upstream 75721 61573647 ~ 61574018 (+) True G911617
TU1036749 lncRNA upstream 76804 61572559 ~ 61572935 (+) True G911618
TU1036747 lncRNA upstream 77224 61572137 ~ 61572515 (+) True G911616
TU1036795 lncRNA downstream 7914 61667407 ~ 61675887 (+) False G911655
TU1036796 lncRNA downstream 7914 61667407 ~ 61675887 (+) True G911655
TU1036797 lncRNA downstream 9681 61669174 ~ 61670097 (+) True G911656
TU1036805 lncRNA downstream 17619 61677112 ~ 61677520 (+) True G911658
TU1036806 lncRNA downstream 18561 61678054 ~ 61678486 (+) True G911659
XM_036933563.1 mRNA upstream 31278 61607881 ~ 61618461 (+) False LOC110534941
XM_021619295.2 mRNA downstream 33850 61693343 ~ 61694713 (+) True tmem187
XM_021619296.2 mRNA downstream 38081 61697574 ~ 61705213 (+) True ndufs8a
XR_005034358.1 mRNA downstream 51616 61711109 ~ 61712946 (+) False LOC110534943
XR_005034359.1 mRNA downstream 51616 61711109 ~ 61712946 (+) False LOC110534943
XM_021619299.2 mRNA downstream 65672 61725165 ~ 61736061 (+) False LOC110534440
TU1036742 other upstream 80677 61566357 ~ 61569062 (+) True G911611
TU1036460 other upstream 467469 61181749 ~ 61182270 (+) False LOC110533174
TU1036461 other upstream 467531 61181749 ~ 61182208 (+) False LOC110533174
TU1036457 other upstream 468074 61151264 ~ 61181665 (+) False LOC110533174
TU1036814 other downstream 31776 61691269 ~ 61691638 (+) True G911667
TU1037247 other downstream 578484 62237977 ~ 62335475 (+) True G912025
TU1037122 other downstream 786117 62445610 ~ 62448810 (+) True LOC110534674
TU1037210 other downstream 876963 62536456 ~ 62562633 (+) False LOC110534616
TU1037138 other downstream 881307 62540800 ~ 62591739 (+) True G911920

Expression Profile


XM_021619292.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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XM_021619292.2 Expression in each Bioproject

Bar chart with 15 bars.
XM_021619292.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.