RNA id: XM_036933573.1



Basic Information


Item Value
RNA id XM_036933573.1
length 5510
RNA type mRNA
GC content 0.56
exon number 21
gene id kdm2aa
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 61746177 ~ 61768303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGATGTTTATACTGTACAatggagcgGTCGGGCACGCGGCGGCGCTACCATGACGATGGTATCTCGGACGACGAGATCGAGGGGAAGAGGACCTTTGACCTGGAGGAGAAGCTGACGAGCGAGAGGTTCACCTCGGACAGGGTCAAACGCATGGAGGGGAAAGACCTCACGTTTGAGTACATCCAAAGAGGTGGGTTGAGGGACCCGATCATCTTTGAGAAGCCAGACGGACTGGGCATCAAGATGCCAGATCCAGACTTCAGTGTGAACGACGTCAAGATATTTGTCGGCAGCAGGCGTATGATGGATGTGATGGATGTCAGTACTCAGAAGGGTATAGAGATGTCTATGGCCCAGTGGAGACGTTACTACGAGACGCCCCCCTCCCAGAGGGACAAACTCTACAACGTCATCAGCCTGGAGTTTAGCCACACCAAGCTGGAGAACCTGGTCCAGAGGCCTGCATCGGTGGACATCATAgactgggtggacaacatgtGGCCTCGGCAcctgaaggagagacagagagactccaccAACTCCATCACAGACATGCAGTACCCCAAAGTGCAGAAgTACTGTCTAATGAGTGTGCAGGGCTGCTACACAGACTTCCACATAGACTTCGGCGGTTCCTCGGTCTGGTACCACATACTGCGGGGAGGCAAGGTGTTCTGGCTGATCCCGCCCACGCCTCAGAACCTGGAGCTGTATGAGGACTGGGTGTTGTCGGGGAAACAGGGAGACATCTTCCTGGGAGACAAGGCCCAGGACTGTCAGAGGATCGAGCTGAAGCAGGGCTATACCTTCATGATCCCCTCAGGTTGGATCCACGCGGTCTACACACCAGTGGACACCCTGGTGTTTGGGGGAAACTTCCTCCATAGCTTCAACATCCCCATGCAACTCAACATCTACAGCATCGAGGACAGGACACGGGTACCAGCTAAGTTCCGTTACCCGTTCTATTATGAGATGTGTTGGTACGTGCTGGAGAGATACCTCTTCAGTCTGACCAACACCTCCTACCTCACGCCTGACTTCCAGAAACACTCCCTGGGCATCGGTCTTACCAGAGACCCCTCCACCTGTGAGTCAGTCAACGGGCACACccaggaggaggatgaagaggaggctcCCCCGACCCGGGGCTCTAAGCccggggtgaaggttcacctcaCGCCCTTTGAGCTGGAGGGGCTGTGGAACCTGCTGGGGAAGCTGGAGTCGTTGCCCTCACAGAAGAACTGTGTCCCGGCAGGCATACACGATGCTCCCGCTCTGCTGCACGACATccggGCCCTGCTGAAGGAGCACGCTAATGACATCCCCAAACTGTCCTACACTGGCAAGCCCATCGTCAAGTGGCCcaagaggCCGTCGTGGTACcagccccctccccctcctcccccggtGGCTCGTCCCAAGCTGTCTGCCACGGTGGTGACCCCGCGACCCCAGAAGCCCGCCTCCTCCATGTCCGTGCTGCGGCGGCGGCGCGTGCGGTGTAAGCGCTGCGAGGCGTGTGTCAGGACGGAGTGCGGGGACTGTAACTTCTGCAGGGACATGAAGAAGTTCGGCGGGCCGGGGAAACTCAAACAGACCTGCGTGCTCCGACAGTGTCTGGCGcCGGGTCTGCCCCTGTCAGTGGTGTGTGAGATCTGTGCAGAGGGgaaccaggagggaggagaggggccaGTCTTCGCCCTCACCCTCATGGAGTGTTCCAACTGTGCCCAGATAGCCCACCCCGCCTGCCTCAAGgTAACAGGGGATGGTGTGGTGAATACAGATCTGCCCAGCTGCTGGGAGTGTCccaaatgtgttctgggaatcaCCGACACTGAGGTGAAGGAGGACAAGAATAAAATGTTACACGCAAAACGCAAGTCTTCTTCGTATCTCGACGGCCGCATCGCCAAGATCTACCGTCGCCGTGGTCACAGCCGAGACGACGACGACGACTCGGGcagcgatgatgatgatgatgataatgatgaaggCTCCAGGGGCGGAGGAGGAGGCGCGGGACAGAAGATGTCCGGGCCACGCCCTCGCGGCAGTGGCTCCGCCTCTCGGAGAGGCTATGGGACTGGGAGGCGGGGCATTTGGAGAGGCTCCTCCCACATAGGGGCAGGCCGCGGGAGTGGGCTTGCCCCTCACTCCTCCCTGAAGATGAGGCGCGGCAGAGGAGGGCTGGGGGCGGgccgaggggatagagagggggggcgTAGGGAGAGGGGCGGGAGAGTGCGCCTCCGGGGAGGCACCAGGATGCAGAGGCGCAGGGACGAGTCAgaggatgacgatgatgatgacgaGGAAGATGACGACAGCGAGGAAGATCGGCAGCATCACCACCGGCAACGCCGCAGGCGGAGGAGAACGGACGACGAGGAAGACGACGACGATGATGAAGACGATGATGAGGAAGACAGCTCGGCCCGGGACCTGGAGGATGAGGACATGGCggatgaagatgaggatgagGAAGACGATGAGAACAGGTCAGACTCTGAACCAGAGCCTCCCGTCCTCCTGGTGTCTGACCTTAACGACGACCTCCTAAACGGCTCATACCTGACAGTGACCCTACAGCGCCCCCCCAGGGCCAAACGCCACCCCGGCTCCATCGTGCCCAAGCTGGAGGCCGCCATGTCTCCCAGAACCCACGGCGGCGGTCCAGGTTACGTCCAGCATAAAACTCTCGGGAAGACGCGGCACAAAAACGGCATGGTCGCCGCCGGCAACGGCCTGGCCCAACCCGCTAAGAATCCAGTCGGCCGGCCGCCTCGTCACCGTATCAACAATCCCCACGGCGACAcaacagacagggaaagagagagggacactgCCTCTCATTCCTACTCTGACTCCTCGgcctcccccacccctcctccccactcctcccactctccttcctCGCTCCTGTCGCTTCCCTCCTTTAAGGATGTAGGAAAcgagaaaggaggggagaaggaggtgtgGGTGGCGGTGTTCCGTTACCTGAGCCGAGCCGAGCTGGCTAGCTGTATGGCTGTCTGTAAGGCCTGGTACAAATGgaGTTGTGACAAGCGTCTGTGGAGTGGTGTGGATGTATCGCggtgtccctccctctcctcccaggcCGTGCAGGGCATCATCAAACGCCAGCCCACCTCGCTGGACCTTTCCTGGACCCCCGTGTCCAAGAAACAGATCACCCTGCTCATACACCGCCTGccagGCCTGAAGGAGTTGATGATAGCAGGTTGCTCCTGGTCGTCCATGTCAGCCCTGTCCACCCCCAGCCTGCCGTGCCTCCGTACCCTGGACCTGCGCTGGGCAGAGGGCGTCAAAGACACCCAGATCAGGGACCTGGTCATACCACCAGGTTGTGACAGTCGGTCTCGGCTGCGTGGCTGTGTGGCGCTGCGTCTAGCCGGCCTGGACATCAGTGACTCCACCCTGAGGCTGATTCTCCGTCACATGCCCCTGCTAGAGCGGCTGGACCTGGCCCACTGCAGGGACCTCACGGACCAATCCATCTGCCTGCTCACCGCCGCCGGCACAAACACACGCAACACGCTCACGGAGATCAACCTCGCAGgttGTAACAAGCTGACGGACGGCTGTCTGGCGTACCTGAAGAGGGCGTCTGGCCTGGCGCTGCTGGACCTGCGGGGCTGCAAAGGTGTGACGCTGCGGGGCTGTGAGGGCTTCATCTCGGACCTCTCTCACTGCGTCCTGTTCTGTATGACGGAGGAGAAACTCATTCAGAGGATATCGTAAAACTCACCGCGTTCTTACTCCTACGCAAGGGGCACATAGTGACCCcgtgccagccagccaggcaggggggagagatggggagcaGCCAACACCCCTCCCCCGAAAAGGAGAACAAGCGCCCCAAAAAAAGGAGGGCGAGCTAAAAACAAAAGCGAAAAGACATTCCCACTCCTCActtgggaagagaggggaggatgaagaggggagGATGAAGAGATGTGTAAGGAGAGGGGAGAATGTGCTGTTGCAGCATCATGTTTATTAGGAGGTTTAGGAATGATATGGATAGCACAGACACTTGCTAGTGTTGTTCACGCAACAGGGCTGAAAATGGGAAccctgggcctcccgagtggtgcaatggtctaaggcactggacgtgccactagagattctggttcaagtccaggctcagTCGCAGCTGgacgtgaccgggagacccatgaggcggcgcaaaattggcccagcgtcgtcgtccgggttaggggagggtttggccatgatgtccttgtcccatcacgcactagcgactcctgtggcgggccgggcacaatgCACGCTGagacggtcgccaggtgtacggtgtttcctccgacacattggtgcggctggcttccgggttaagcgggcattgtgtcgagaagcagtgcggcttggttgggttgtgtttctgaggacgcgcgaccttcgcctctcccgagtccgtacgggagttgcagcgatgagacaagactgtaaactaccaattggataccacgaaattggggagaaaaaaggttGAACAAAGAAAATGGAAACCCTATGGATTGAATGTGGGTTTTTGTGCGACATGGTCTACATGAAGTGGAGTGAATCAGGGTTTAGGTTTCAGGAGGGGTTGAGAGGGAAGGGGACTGGGGAAGACCCAGACATGACTGGTGTGTCCCACTAGGTCCAGACTCTATGCCACACTGTCCAACACTTCCACGGACTCCTTGGGGAAACCGAGTCGGTACTGATGATGATGAAATGCAAATTAGTGCCAACGGGTTCCTGGAACCCCCCCCCATTTCGGCTCTCATTGTTTCAGCTCTCTTCTTTTCGCGCCATCCTCACCTCTGTTCCTTACGCTTACAGCCATGCGTTTTGTTGGATAAAAAACGTACTGTATCTCTCATTAGTTACATCCAAAACGGTACCCTGTTCCTCATAGTACACTACtacagagccctggtcaaaggtagtactctatatatggaatagggtgctatttgggacgaaTACATTGTTTCTCTTCAGTTTTACTTGACTCATTTCTCACTACCAGCCACTACAGGTCTTAACTTTTCTTCTTTGAATTCCCTCATTTGAGACTATTTTCCTCCTGTCATTTTAATGTCTTTCCTTTGTCTTTTTACATGTGTAATGTTTTGTTCATCCCTCCGTCTCGGTCCCCCATAATGTTATTGTTAATAATGTTGAACCGGAAGGCTCTTGGGTTGGGTGCGTCGCAAatgtcaccctagacccaatatagtgcactacttttgaaaattatatagggaatagggtaccatttgggacgtggTCTTGGTGAATTGTTTTGGTTGCCCTACTGCAGTTGCTCAATGGGACTGTAATGTGCCTGTAGCATTGCAATCAATTATATAATTATTTTCTGAAATGTTTTGCAGAAATTCTCTTAATTTGTGGTTTTTGCAAGAAAAAGAAAATTAAAACAAAAATCTGAAATGAATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1036863 lncRNA upstream 11078 61737761 ~ 61737990 (+) True G911711
TU1036861 lncRNA upstream 12293 61736575 ~ 61736775 (+) True G911709
TU1036844 lncRNA upstream 36284 61712421 ~ 61712784 (+) True LOC110534943
TU1036827 lncRNA upstream 38226 61710541 ~ 61710842 (+) True G911680
TU1036824 lncRNA upstream 39865 61708987 ~ 61709203 (+) True G911677
TU1036868 lncRNA downstream 772 61769075 ~ 61769315 (+) True G911716
TU1036872 lncRNA downstream 6012 61774315 ~ 61774636 (+) True G911720
TU1036874 lncRNA downstream 10619 61778922 ~ 61779139 (+) True G911722
TU1036879 lncRNA downstream 21075 61789378 ~ 61790570 (+) True G911726
TU1036881 lncRNA downstream 27744 61796047 ~ 61796252 (+) True G911728
XM_036933575.1 mRNA upstream 3004 61738332 ~ 61746064 (+) False LOC110534442
XM_036933574.1 mRNA upstream 3004 61739018 ~ 61746064 (+) False LOC110534442
XM_021619306.2 mRNA upstream 3004 61739340 ~ 61746064 (+) True LOC110534442
XM_036933569.1 mRNA upstream 13007 61726349 ~ 61736061 (+) False LOC110534440
XM_036933580.1 mRNA downstream 53448 61821751 ~ 61834621 (+) True LOC110534449
XM_036933578.1 mRNA downstream 66721 61835024 ~ 61844735 (+) False LOC110534447
XM_021619313.2 mRNA downstream 66853 61835156 ~ 61844735 (+) False LOC110534447
XM_021619314.2 mRNA downstream 66853 61835156 ~ 61844735 (+) False LOC110534447
XM_021619315.2 mRNA downstream 67150 61835453 ~ 61844735 (+) True LOC110534447
TU1036814 other upstream 57430 61691269 ~ 61691638 (+) True G911667
TU1036737 other upstream 89568 61649757 ~ 61659500 (+) True si:dkey-9i23.4
TU1036791 other upstream 90642 61657327 ~ 61658426 (+) True G911652
TU1036742 other upstream 180006 61566357 ~ 61569062 (+) True G911611
TU1036461 other upstream 566860 61181749 ~ 61182208 (+) False LOC110533174
TU1037247 other downstream 469674 62237977 ~ 62335475 (+) True G912025
TU1037122 other downstream 677307 62445610 ~ 62448810 (+) True LOC110534674
TU1037210 other downstream 768153 62536456 ~ 62562633 (+) False LOC110534616
TU1037138 other downstream 772497 62540800 ~ 62591739 (+) True G911920
TU1037108 other downstream 935656 62703959 ~ 62705367 (+) True LOC110534617

Expression Profile


XM_036933573.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XM_036933573.1 Expression in each Bioproject

Bar chart with 18 bars.
XM_036933573.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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