RNA id: TCONS_00003753


Basic Information

Item Value
RNA id TCONS_00003753
length 381
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_001903
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8091144 ~ 8098099 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGTATGCCGAAGTCAAAAGAAGTGCTGTCTTCAACCTCAGGCAGCGATTCGGACAGTGAAGTTGACACGAAGGCCAAGAGAAAGAAGCAGGCGACACCTGAAAAACCatcaaaaaagcaaaaaagcGGAGAAAGTTCATCTGCCTCcaaaagcagcagcagcaataAAAATGATAACATGTTCCAGatagGAAAGATGAGGTATGTGAGTGTTCGGGATTTTAAAGGAAAAGTGCTTATTGATATCCGGGAATACTGGATGGACCAAGAGGGTGAAATGAAACCAGGCAGGAAAGgTATTTCACTCAACCCAGAGCAGTGGAACCAACTAAAAGAGCAGATAAGTGAGATCGATGATGCCGTGAAGAGGACATAAGTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-151 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SUB1 (SUB1 regulator of transcription).

Ensembl:

ensembl_id ENSDART00000189915

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005827 lncRNA upstream 53801 8036184 ~ 8037889 (+) True XLOC_001902
TCONS_00005679 lncRNA upstream 99231 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00005826 lncRNA upstream 107108 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005825 lncRNA upstream 189802 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005824 lncRNA upstream 241817 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00003758 lncRNA downstream 154273 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00003761 lncRNA downstream 304226 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00005680 lncRNA downstream 549089 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00005828 lncRNA downstream 611615 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005681 lncRNA downstream 675566 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00003750 mRNA upstream 286680 7798087 ~ 7805010 (+) True XLOC_001896
TCONS_00003747 mRNA upstream 368233 7709724 ~ 7723457 (+) False XLOC_001895
TCONS_00003746 mRNA upstream 369787 7703251 ~ 7721903 (+) False XLOC_001895
TCONS_00003754 mRNA downstream 3859 8101729 ~ 8130593 (+) False XLOC_001904
TCONS_00003755 mRNA downstream 3893 8101763 ~ 8141923 (+) False XLOC_001904
TCONS_00003756 mRNA downstream 3893 8101763 ~ 8142213 (+) True XLOC_001904
TCONS_00003757 mRNA downstream 99957 8197827 ~ 8266094 (+) False XLOC_001905
TCONS_00003760 mRNA downstream 304059 8401929 ~ 8412964 (+) False XLOC_001907
TCONS_00003739 other upstream 513639 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 881582 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 2322078 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 2939289 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 2944108 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003759 other downstream 245318 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 764651 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 771598 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 1248526 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 1627904 9725774 ~ 9725891 (+) True XLOC_001937

Expression Profile

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