RNA id: XM_036933763.1


Basic Information

Item Value
RNA id XM_036933763.1
length 5086
RNA type mRNA
GC content 0.57
exon number 27
gene id cntln
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 69652985 ~ 69791247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCAAGAGGAGAGAAAATCTGATTCATACAGTATAAATGCCATGTGTCCGTCTGTGCAAGTCTAACAGGGCAGATGTTGCGCATTACGCGCCAGTCTACTGCCTCTGAAACCGCTCCACAAATGAGGATCCTAATGAGAGGCACTGCTTCTCTATGATGGCTACTAGAGACAGCAGTCGCATCATGCTGCTGAAGGAAGAAGTGAGGAGTTTGTCTGAGGAGTTAGTGCAATGCCAGGCTGACAAGGAGTTTGTGTGGTCCCTATGGAAACGCCTCCAAGTAGCCAATCCGGACCTGACCCAGGCCGTCAGCCTAGTGGTCGAACGAGAGAAATGGAAAGCTGAAGCCAAGGACCGCAAGGTGCTGGAGATCCTGCAGGCCAAAGACTACAAGATCCAGGAGCTGGACCAGAGAGTGACAGGGCAGCAGCAGGAGATCACCAACCTGGTCCAGAGGAAGATGGCTGTGGACGAGGACAGAGGCCTAGTGAAGAAGGAGCTGGCAGCTCTGCGCCGCAAACTGGGGAATAAGAGTCAAGAACTTAAGgatgtgaaggaggagagggggaggagagaagaggccctggaggaggagaaggaggcatTAGAGTCCTGCTGCTCTGCCCTGCGAGGCGACCTGGAGCAGGCacagaggcaggagaggaggcacggagaggagaaggaggcaTTAGAGTCCTGCTGCTCTGCCCTGCGAGGCGACCTGGAGCAGGCacagaggcaggagaggagacacggagaggagagagactccgCGGATGCCAAAGTCAAGGAGATGGAGGGTGATCTGAGCGATGCCCAGCGGCAGGTGGCAGACCTTCAGGGCCAGTGCAGCAGCCTGgcagacctcctctcctccaggcagAAGGAGGTGGCACAGAGGGACCAACACGTCACCCAACTCAGGCGTGAGCTGCAGGAGGTGCAGGCCCTGTACAGACAGAGTAGTGAACATGCTGCAGAGCAGGCCCAGCTCATCCAGCAGCTAGAAGGACTCAACCTGGACACACAGAGAGTCTTACGCAACCAGGAAGAGgctcacactgcagacaccacctCTTATCAGAAGCTCTACAACGAGCTGAGCATATGTTACCAGGCACTCAAATCCAACGAGGGCCGGCTCCGCCAGAGTCACGTCGCCCTGACAACCCAGCTGGGCCAGAAGGAACAGCAGATTGTGCAGCTCCAAGGCCagctacagcaacaacaacaacagcagacaCACAACCAGCAGCAGCTTCCACAGACCATGGCCCCAGCCGGTCCCCCAGCCAGGCAGACCAACTCTAAACACTTTGAGGAGCAGACTCTGTATGACTCTCCAGATCAGGAACCCAGTGGAGAGGAGGCCCCACCCTCAACCTGTAGCCCGGTCCCACAGCAGCCCCCGGGGCCCCCAGACACATCGCTGGCCCTCAGCCCCTCCAGGGGCCAACACACTGGGAGACGGCAGAGTGCACCGGTGCAGCTGTCCAGGTCGTTGTCCCCGGCGAGCAGCGTGGAGTCAGGAAGAGGAGTGGAAAAGAGGATTCATGACCTGGAGGAGCTGCTCAGACTGAAGACGGTCGAGAACGAGGAGCTGCGGAGGGCCCATGAGAAACGCCACGAGCGCCTGCGTCTCGTCCAGACCAACTACCGGACGGTCAAAGACCAGCTCCGAGAGGTGGAGGACGCACAGGGCCTGCCCAGGGGCAGGGCCCAGCAGCGGGCAGAGCCGTGGCAGCTCCGCCAGGAGAACAGCGATGCGGTGTGGAACGAGCTGGCCTACTTCAAACACCTCAACAAGAAGCTCACTACACAcaaGACTAACCTAGAGGAGGAGCTGGATGTGTTGCGTGTCCAGACTGCTATGGACCGGGCCACTGTACAGGAGCTGAGGCTGTGTCTTCAGAACAAACAACCAGAGCTTCTTCACAAAGTGGCCGCTGATCCGGAGGTCAAGAACAGCACTCCCAAAAAGCCCTCTGCCGAGAGAGTGGAGCAGTCGCTGAAGAAGATAGAACAGTTGGAGAGGAGGACGGTGTCCATGGAGCAGGAGACCGAGAGGCTGAGGGAGGACAACCAGCACCTCCAGGAGGCCAACACAGCTCTAACCCAGGACAAGGAGCACCTCCAGGGCTCCCTGGCCCGCCTCCGCACCCAGGGGGCTGTTCGCGACGAGGCGGCCCATGCCCAGGCACTCGCCCAGGGGGAGAGACACCGCACCGAGGCCCTGGCCCTGGAGACCCAGCTGGAGGGGGCCAGGAAGGAAGCCGGACGCACCCGGCAGCAGCTGCTCCGGCTCAGGCAGGAGCTGGGCATCCTGAGGGCGGCCCGGGACTTCAACAGGAGGCAGAGAGGACCCAAGGCTAACATGCTAACAGGGCTGGCCGCAACAGCCACAGCAGGAGGAGGAATAAGTGGAGGGGCATTAGCAAACAACAAGGTCAAATTCAAAACAGGCATGCGGCCCAGAGGCCCGGCACGGCTGCACCGCCACCGAGCGGTTGGCCCCAATCAAGCCATCGGAGGAGGAGGCGGCAGCCCTGCTAGGGACGACTGGGAGGACATAAGCGCGGACAGTGGAGAGGAGTACTCTGACAGCCTGGACAGTCACCCAATCAAGTCACACAGGTACGCAGCCGCCTCAGAACAGCCAGCGGAAGAATTCTCCAGAACACAGCCCGATGTTCCGAACCAAGGATATAAACAGAGGGAGccgggggaggaaggagggaagagacgaagtgagagaaagaggaggaaggccCAAAGGTGCGGCTGCTGTGCCCCCGCCTCACTGCGCGGGCGCGTTCTGGCGCTCCAGCGCCATCTCGCCGTTCTACAGACCGTCCGATGTGATGCCCAGCGCTCCTCCCAGGAGCTGCGAGACGCCAACGAGAAGATCACGTCGCAGCTCGCCCAGAGACTGAACGTCAGCAAGCAGTTATCACAGaagctgacctctgacctggcGGGTGTAGAGCAGCAGAAGAAGGTGCTGGAGATGGAGCTGGAGCAGTGGAGGCAGATCCACAGGACCAACACCCCCCAGCAGCTCCCCTCTACCGCCCCCCAGCCCCTGGAGACCCCCAGCCCTCCTGTCCTTAAAGCCCTGGAGGCAGAGGTCAAACATCTCCACACTAAACTGAAGAGCTCCAAGGCGGAGGTGACGAGCCACACATCGGCTAACAAAGCCCTGCGAGCCCAgctgctggagagagaggagaagctcAGAGAACTGCAGGAGAAGGtgatccacacagagagagacgtgCACATGAAGAGGCAGCTGGTGGAGGATGTGAAGACCAGGATGAAGTTCCTCCTGGAGACTGAGAAGACACACAGAGGActggtggaggagctggagaagAAAGTGAAGACCTTGACAGAGGAGGCCACTAACAGGAAGGCCTATATAGACTCTCTGAAGAGGAGGCTGAGTGTAGCCACTAAAGAGAAGAGTCAGTATGAGACGACCTGTCAGGATCTCAAGGAGGGCCTGGACAAGAAGGAGCAGTGTGTGGAGGCCCTGCAGGCCCGTGTGAGGGCCAGTGAGCGGGCCCAGGCTGAGCTGGAGCAGACAGCATCCCGTCAGATGGAGGGTCTGGCCCAGCAGAGCACCGTGGCCCTGGAGGCCCTGCACAGACGACTGGGCCTGGCCCACACACAGCTGGAGCAGCTACAAGCCTTCACTAAGGCTCTGGCAAGCGAAACTCTCCGCGAGGTGCAGGACGCCAAATCGCAGCTGAGGAAGAACAGGAAGATGGCGGAGAAGAAGAAGGCAGAAGGTGCCGGAGGGCTGTCCAAGCAGTCCATGGTCAAGGCCCAGTCCATTGCTGCGTCCATCCTCAACATGACCGAGATGGACCTGGCTGAAATGCTGGACACCGATGAGGAGGAGGATGATGTGGCAGCAGACAGCAGGAGAGACCAGGAGTGGCTGGACCAGGTCATGAAGATCCTCCAACAGCAGatCCCCTCTGCTGCTCTCCTAATGGAGGTGCTGTGTGtgaagatgaaggagaggaaagTGCTGACAGAAGCGCTGGCCGCGCTCACAACACCAGTCAGCGAAATCGCCTGACTCCCACTCCGGGGCTGAGGGCTGCGGCTGGGAAAAACTGTcatcctctcactctcctcctcctcttctctctccatccctccttcgtGCCCAGGCCTTTCTTTCTCAGCGGGGGCTGAGTTGGCCAAGTCGACCTGAAgttgctctctgtgtgtgtgcgtgtgcgtgagcaCGCACGTGTATGAAGTTGCCTCCACGCCGCACTTCCAGAACAAATATTTACGAGAAAAGCGCTGTCGACTCACTCCGAGCCACTCGCTCACGCAGCGGTCTAGTGCCGTGCCGGGGCCCAGCCTTTGTAAATGAGCCCCCAACATCTGCGTTAGTGGTTAGCGTGCTCCATCTGCGAGACAGGGCCCTTTAGCGTCAGGCTAatttacagtacagagacaaacgctctctatctctttctctccctactcCAAACGCCATCCTGAGGTGATGATAACATTATGCTTACGTTTTTACTTCAAGTTAGACATGAtttgttatgttttttttattttgatattttcagtaaTTTATTGTGGATCTCAAGGACCCCCCAGGGTGCTCGGAGTGGGACCTGACCCAACAGTGCAGACTCAACGAAAGAAAAAGTATCCTCTTAAAGTAAGAAGCAGacatactctctctcctcttaggaTATACTGGACTCAAACCCGACACATGCATTCCATGTCCCATTTGGACCGGTTGGATTCCATTGTTCCATTCACGTTTCAGTGACCAAATGCTCTTAACGTGAATGATAgcataaaatatacattttgtgtgttttgtttgttatgtcTAGGTATATTCtgaaatgtgttttatttcaggatACTACTAGACATTTGTGTGTTCACTTCATACGGTATTTTACAATAGGTAATTAATTATGTTATATTGTTAATTGATTGAAACTGAATTGAAATAAAAGTGCGTTgccaattgttttatttttacacTATGGAGTCAAGATTATGGATCTGTCACATTAaagttgcacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1047206 lncRNA downstream 11960 69640745 ~ 69641026 (-) True G920850
TU1047199 lncRNA downstream 42784 69609785 ~ 69610202 (-) True G920843
TU1047193 lncRNA downstream 57329 69594543 ~ 69595657 (-) True G920837
TU1047192 lncRNA downstream 58620 69594129 ~ 69594366 (-) True G920836
TU1047177 lncRNA downstream 107483 69544918 ~ 69545503 (-) True G920822
TU1047367 lncRNA upstream 297971 70089218 ~ 70095825 (-) False G920994
TU1047374 lncRNA upstream 297971 70089218 ~ 70095825 (-) False G920994
TU1047410 lncRNA upstream 336045 70127292 ~ 70127502 (-) True G921026
TU1047444 lncRNA upstream 372330 70163577 ~ 70163789 (-) True G921053
TU1047478 lncRNA upstream 411799 70203046 ~ 70203307 (-) True G921087
XM_036933749.1 mRNA downstream 14724 69584009 ~ 69638262 (-) False LOC110534556
XR_005034218.1 mRNA upstream 392076 70183323 ~ 70186200 (-) True LOC118936738
XR_005034217.1 mRNA upstream 397980 70189227 ~ 70191356 (-) True LOC118936737
XM_036933775.1 mRNA upstream 469230 70260477 ~ 70274842 (-) True LOC110497342
XM_036933779.1 mRNA upstream 537097 70328344 ~ 70355179 (-) False LOC110516757
XM_036933780.1 mRNA upstream 537097 70328344 ~ 70355179 (-) False LOC110516757
TU1046891 other downstream 647759 69003279 ~ 69005227 (-) True G920582
TU1046888 other downstream 652340 69000396 ~ 69000646 (-) True G920579
TU1046881 other downstream 659760 68992786 ~ 68993226 (-) True G920572
TU1046877 other downstream 664026 68988236 ~ 68988960 (-) False G920568
TU1046446 other downstream 1299051 68343500 ~ 68353935 (-) True G920179
TU1047364 other upstream 301614 70092861 ~ 70095825 (-) False G920994
TU1047366 other upstream 301614 70092861 ~ 70095825 (-) False G920994
TU1047370 other upstream 301614 70092861 ~ 70095825 (-) False G920994
TU1047373 other upstream 301614 70092861 ~ 70095825 (-) False G920994
TU1047378 other upstream 301614 70092861 ~ 70095825 (-) True G920994

Expression Profile