RNA id: TU1047577


Basic Information

Item Value
RNA id TU1047577
length 1343
lncRNA type read_through
GC content 0.42
exon number 4
gene id LOC110516757
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 70328344 ~ 70355179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGCTGGCGCGCAGTGCAGAGTTCCACTCCTCCAGGACTCTGTGGACAGGTGTGGCCCTGCTGTCTGTGCAGGGCGGGGCCTTGGCCTGGCTCACCTGGTGGGTGTACTCCTGGGATGTCATGGAGCCCGTCACCTACTTCCTCACCTACTGCACCAGCATCGGAGTCTTCTCCTACTATGTCCTCACCAagcagATGCCAAAGACAGGCAGTTCCTGTATTACTTCCACAAGGGTGCCAAGAAGGAGCGCTTCAACGTGCAGAAGTACaatgagctgagagaggagtTGGCTTCGATTTGAGACGTCTAAGGAATCCAACCCAACTTCAGCTCCCTGTAGAACAGATCCAGAGCCAGCCATGAAGagcagcaccacacacacacacaccgtcaaaCTGAAGGACTACTGAGCAGCAGCATTTCTTCCCTTTTATTTTGATAACAATGCATTTTTCTTACTAACCCTGCAGATCATTTTAGAGTTTTAGTTTACACCGGTTACAATGTTGGAAGTCATTTGTGGTAATAGAAGTAAAGTAATAAATATCATATGAGAAAGCATCTTCCTGAATACTAACCATATTTTCTCTGCATTCCTGGCCATTGCCGTAAATCAATATAGTAGCTAGTGTCATTTCTATAGAAGAGCAAAGTTATGAATAGTGATGATGTGTATATAATGAGATGATCCATTCTGAACGTTTACAAAGATTAAGAGGAACTGAGACTGAACACAAATTACATTTCAATATTTTATTTCAACAGTTTTACAACTGTCATTTTATAAATGAGAGATTCTAACTCAATAGGAGCCCCACGCACCTCTCCAAATGCTATTAGTGCAAACCCAATCTCCCAAAAGGTCAGAGATACATTTCCCTGGTGGACCACAAAACGAGAAAAGTACATTACTCTTACCAAGCAGAAGTTCCTTATATTCACCCATGGAGACTAAAATGGTCCTCATTTTCTTGAACAATTCAGAAATAGAAACATGAATTGGTGTCCAGCACTCAGGTTCACATACAAATGAGTAATACCTCATGCATTGTCATTGCTTTAGTAAATATCTCACAAGTGACTAACAATTATTTATTTGTTAAACATGAGATGGTCGGTTGATTGGTACCCTGAGTTGTCTTATCTGAGTTATATAATGCACACTTGCACATATTTTCTGGCTGAAGAATATGCCTGTAGTCATGTGGTGTATAAAAATGGTATTTAAAAAGATTGGTACTGTTAAAGTTGTTCAGTATTGGAGCgacaggtagccaagtggttagagatGCGAGCCAGCAACCAGATGGTTTCCAATCCCAGCCCAGATGGGATGTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1047625 lncRNA downstream 5985 70321803 ~ 70322396 (-) True G921210
TU1047622 lncRNA downstream 9972 70318188 ~ 70318409 (-) True G921207
TU1047621 lncRNA downstream 10427 70317734 ~ 70317954 (-) True G921206
TU1047614 lncRNA downstream 13934 70313583 ~ 70314447 (-) False G921203
TU1047617 lncRNA downstream 14077 70313583 ~ 70314304 (-) True G921203
TU1047644 lncRNA upstream 37730 70368633 ~ 70368840 (-) True G921229
TU1047647 lncRNA upstream 41404 70372307 ~ 70372514 (-) True G921232
TU1047663 lncRNA upstream 60690 70391593 ~ 70391842 (-) True G921248
TU1047670 lncRNA upstream 64623 70395526 ~ 70396745 (-) True G921255
TU1047687 lncRNA upstream 80000 70410903 ~ 70411139 (-) True G921265
XM_036933775.1 mRNA downstream 53539 70260477 ~ 70274842 (-) True LOC110497342
XR_005034217.1 mRNA downstream 137025 70189227 ~ 70191356 (-) True LOC118936737
XR_005034218.1 mRNA downstream 142181 70183323 ~ 70186200 (-) True LOC118936738
XM_036933763.1 mRNA downstream 537134 69652986 ~ 69791247 (-) False cntln
XM_036933764.1 mRNA downstream 537359 69652986 ~ 69791022 (-) False cntln
XM_021573382.2 mRNA upstream 161976 70492879 ~ 70496296 (-) True LOC110497327
XM_036933797.1 mRNA upstream 164266 70495169 ~ 70503215 (-) False LOC110497323
XM_036933798.1 mRNA upstream 164266 70495169 ~ 70503215 (-) False LOC110497323
XM_036933800.1 mRNA upstream 166461 70497364 ~ 70503218 (-) False LOC110497323
XM_036933799.1 mRNA upstream 166490 70497393 ~ 70503217 (-) False LOC110497323
TU1047364 other downstream 232556 70092861 ~ 70095825 (-) False G920994
TU1047578 other upstream 280 70331183 ~ 70355145 (-) True LOC110516757
TU1047862 other upstream 196635 70527538 ~ 70529462 (-) False G921389
TU1048167 other upstream 407932 70738835 ~ 70741319 (-) True G921673
TU1048176 other upstream 415784 70746687 ~ 70816302 (-) True G921677
TU1048419 other upstream 685593 71016496 ~ 71016929 (-) True G921899

Expression Profile