RNA id: XM_021573382.2


Basic Information

Item Value
RNA id XM_021573382.2
length 1388
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110497327
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 70492879 ~ 70496296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGACCACTGCCACACAACGACCTTCCTACTTTCCATGGTGTCTGAGTGTCAGTCTGCCTGTACGTTCAGCCACAGCCAGCTCCTTCATTCTGGTGCGGTCCTCTCCGCATTGCAAACCATGGCTTTCTTCACTCACCAAGTCATCAGAGGTCTCTCCTCTTCTGCAGTCCGAAATGCAGCGATCAAACACGTTACGATCATCGGGGGTGGTCAGATGGGTGCAGGTATCGCACAGGTTGCTGCTACAACAGGCCATTCGGTGGTGCTAGTTGACACAAATGAGGAAATCCTGAAGAAATCCGCCAAGGGAATAGAAGGCAGCCTGAAGAGGGTGGTCAAGAAGAAGTTCGCTGACAAGCCAGATGCAGGAGCAGAGTTTATTGCCAAGGTGATGGCCAACGTGTCCATATCGACAGACGCAGCGTCTGTGGTGGGGAGTACAGACTTGGTGCTGGAGGCCATCGTGGAGGACCTCAAGATCAAACAGGGCCTCTTTGGTGCTCTGGACAAAGTGGCACCAGCACACACCATTTTCGCCAGCAACACATCCTCTCTGCCCATCACCGACATAGCCAGCTCCACCAGCAGGCTGGACAGATTTGGAGGGCTGCACTTCTTCAACCCCGTCCCCATGATGAAGCTGGTAGAGGTGATTGGAACATCAGCCACAAGCCAGGACACCTTCGATTCCCTCCTCGCTTTCAGCAAAGCACTGGGAAAGACGCCAGTGTCCTGCAAAGACACTCCTGGGTTCATTGTGAACCGTCTGCTGGTGCCCTACATGATGGAAGCCATCAGGCTACATGAGAGAGGCCACGGGTCAAAGGAGGACATTGATATTGCCATGAAGCTGGGAGCTGGGTATCCCATGGGGCCCTTTGAGCTGCTGGACTACGTAGGACTGGACACGGCTAAGTTCATCATGGACGGCTGGGTTGAGAAGGATCCTGACAACCCGCTGATGCAGCCCAGTGAGATGCTGAACAAGCTGGTGGCCGAGGGCAAGTTCGGCAAGAAGACCGGAGAGGGCTTCTACAAGTACAAGTAACCCCGCCCCAGAATCAACACGAGCTGGAGCCTGTTCATTAAGGCACACCGTGACAAAACGGAAAATGAAAATAAGCGCTTCCGATTGGACAAGATCATGTAGTCCCTCCCAGTACTGATAAGGGCATGAATGATAATAGAAAAAAATGCGGGTTAATTTTGACAACGGTAGAACAGAGATGCAGCTGGTACGACCCACGGTGCCTTCCTGAAGAATGGTAGACCGGTGTTATCAATTCAAATCTGTCTTTTGACTGTATATTCTGAATGTCATCTTTATGTGTGGTTTGTAAGTAACTGAGTTTGTGGCATTAAACTGACTTTTCCAAATGCTTCCCA

Function

GO: NA

KEGG:

id description
K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1047699 lncRNA downstream 68152 70424461 ~ 70424727 (-) True G921277
TU1047697 lncRNA downstream 69261 70423325 ~ 70423618 (-) True G921275
TU1047688 lncRNA downstream 81181 70411487 ~ 70411698 (-) True G921266
TU1047687 lncRNA downstream 81740 70410903 ~ 70411139 (-) True G921265
TU1047670 lncRNA downstream 96134 70395526 ~ 70396745 (-) True G921255
TU1047861 lncRNA upstream 31242 70527538 ~ 70533352 (-) False G921389
TU1047863 lncRNA upstream 31242 70527538 ~ 70529747 (-) True G921389
TU1047879 lncRNA upstream 62988 70559284 ~ 70560901 (-) True G921401
TU1047892 lncRNA upstream 79583 70575879 ~ 70576099 (-) True G921414
TU1047924 lncRNA upstream 112403 70608699 ~ 70611226 (-) True G921446
XM_036933779.1 mRNA downstream 137700 70328344 ~ 70355179 (-) False LOC110516757
XM_036933780.1 mRNA downstream 137700 70328344 ~ 70355179 (-) False LOC110516757
XM_036933775.1 mRNA downstream 218037 70260477 ~ 70274842 (-) True LOC110497342
XR_005034217.1 mRNA downstream 301523 70189227 ~ 70191356 (-) True LOC118936737
XR_005034218.1 mRNA downstream 306679 70183323 ~ 70186200 (-) True LOC118936738
XM_036933800.1 mRNA upstream 1068 70497364 ~ 70503218 (-) False LOC110497323
XM_036933799.1 mRNA upstream 1097 70497393 ~ 70503217 (-) False LOC110497323
XM_036933801.1 mRNA upstream 1628 70497924 ~ 70503220 (-) True LOC110497323
XM_036933802.1 mRNA upstream 7041 70503337 ~ 70526535 (-) False LOC110498629
XM_036933803.1 mRNA upstream 7041 70503337 ~ 70526627 (-) True LOC110498629
TU1047578 other downstream 137734 70331183 ~ 70355145 (-) True LOC110516757
TU1047364 other downstream 397054 70092861 ~ 70095825 (-) False G920994
TU1047862 other upstream 31242 70527538 ~ 70529462 (-) False G921389
TU1048167 other upstream 242539 70738835 ~ 70741319 (-) True G921673
TU1048176 other upstream 250391 70746687 ~ 70816302 (-) True G921677
TU1048419 other upstream 520200 71016496 ~ 71016929 (-) True G921899
TU1048387 other upstream 584610 71080906 ~ 71081512 (-) True LOC110533203

Expression Profile