RNA id: XM_036933835.1


Basic Information

Item Value
RNA id XM_036933835.1
length 2708
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110497311
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 70965392 ~ 71027492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGCTTACTATAACAACGTGCACAGTGAGCTTCACATGAACTGTACCAACGTCTTTAGCTGTCTCGATGGTCCATGTCAAGGACTTGCCTGTGTTGGTGAGGGGCTGCCGTCTCCCCGCCGTACTGGATGAGACTGGGAGGTACTGCAGGGCCGGGCTGGCTGTGGTGCTCAGGCATATTATAGACAGGACCTGTGAGGCAGACCCCAGAAGGAAGGATGCAGCATCACTGCTAGGGTTCAAGAAGACCTGTCTGAAGGCCTGCGCTGAGGTGAGCCAGTGGACCAGGCTGTGTGAGCTCAGTATCCCCTCAGCTGTGGAGGCCCACCTCCGGCAGCCCACTAACCCATCCCTGCACCTCCCCTCTGCCCTCCTCAACCTTGAAAAGACACTAGGCGAGCCCGTCAAGGTGCACAACGACGACAAGATCCGCCGGCAGAAGCTCCAGCAGCAGCAGAAGAACCACCAGAAGAAAATCTCTCAGGACCTCCAAGAGGACCAAGGGACAGACGTCACCCAGCCCCAGGATTCGCAGTCCGCCAACGGGCTAGAACTCCAAGCAGCCCTGGCCAAGCTCTATGTGGATAGTGGTGCAGTTCCGTCCACGACCATTAGGGAGAGCTCTGACATCAGGAAAGTGAAGACCACAGAGCTGCCACAGCTGGAGCATGTGTTTGCCGAGGGGCTGTACttcactctgactgatgtggtgttGCTGCCTTGTATCCATCAATACCTGaGCTCCCTCCAGAGCCACAACGCCAGCGCGCTATCCCAGCTGCCTCTCTTGCTGCGCTGGTACCTCCAGGTCCAGGAAGTCCCCGGGGTCCCCAGGGCGGCCCAGGCCTGTGGGATGGCCCTCTCCACCCGCAAGGCCTTCACTACCGGCCCCCCAACCATAGCCGAAACACAACAGTCCAGCCAAGCAAATCAGGAAAGCCTGGAGATGACGATGAAGGAGGTGCACTTCGTTGGAGGCCCCAGGCCCACGATGACTAAACTCAAAGAGAGCGGTATTGAGGCAGTCTTCTCACCTCATCCTTGCCCCTCCTGGACCCTCCCCTGGGACAGCTTACCGGAGGCCGTCAACCCAACTGAAGGGAAGATGTCTGACGTCCGCGCCGCAAGGAAACGGCAGCAGCTGAACAACCTGGTCGCCATGGCGACGGAGCTGGCCCGACCGGGGGACACCGTGGTGGATTTCTGCAGCGGAGGGGGCCACGTCGGGATCGTTCTGGCTCACACGCTGCCCGACTGCCAGGTGATCCTAATAGAGAACAAGGAGGAATCTCTGGTTAGGGGGAAGGTGAGGAGTGCTGAACTGGGCCTGACCAACATAGGCTTCATCCAGGCCAACCTAGACTACTTCACTGGACCCTTCCACATAGGGgtggCCCTCCATGCGTGTGGCGTTGCGACAGACATGGTGGTAGAGCAGTGTATCCAGGCGGGAGCGACCTTCGTGGTCAGCCCCTGCTGCTACGGCTTCGTCCAGAACACACTGAAGTTCACCTTCCCCAGgagCAAAAGGTTTCTGGAGACACTGAGTTACAAGGAGCACATGATCCTCTGCCGCTTCGCAGACCAGACAGCTGTCCAGCTGCCTTCAGAACGACGCTTAATAGGTAAACAGTGCATGGGCCTGGTGGACCTGGACCGCTCCTGGGCAGCAGAGACTCATGGGTACTCTGTCAGGGTGATGACCATGGAGCCAGACAGCTGCTCCCCCAAGAACAACATGCTGGTGGGTGTTGCTGGAGGCGGGGCTGGAGGGGACAACTATGCCACACAGTAAACCAGAGGCATGTTCAGTTGGCACCCAaaggaaggttgaaaaacaaaaGGAACTACCtcgacttgtccaataagaagaCCGATTTACGTTTGTTGTTGCAAAATGGTTTGCTACGGTTTGCCCTAATGATCACGACCCAGGGTTGTGTTCAGTCGGGAGAAAACGTCTTAAAACCAAGTgaatcagggagggagggacttgTCAGAAGAACATAGAACAGGACCCGACATACAGTCCGTTTCAAACTGAGAATACAGCACTGTAAGGAAACAACGCATCCGTCGCTGGACCAAGATACTAAGTAAAAATCAATCATCTCGGAGGAGTTGAGGGATTTGTCTTGAGATCAGAGAAGAATGAATCACCCTGGTtgaattgatgatgatgatgatgatatttgACCTACAATCAAGAAAAATCCCTTTAGACTCTTTTCTCTAATGATGATCTGGGGCAGGTGTCCCAAGTGTTTCGTTCTCTTGGAATGGTTTTATGGGTATTGGAACTGAGCAATGTCTTTATTTTATCCCttaaatgagttttaatgagcgggcaattatgtggatattgaaTTAATAAACACACTGGAACGTGAGtattttccaaaagtcttgtacaatgtttatttttaacCATTTACTTTTCTCTATTACTTCATCCACGTCAGGGCTCGCAACTGTTGATTTGATATACATTTAGGTCACTGCATTATGTAGCTGGATTGACAGTTTAGTTCTGTTTTCAAACCTTAGTTCTGTTTCAAAAGTGTCTTAACTCATAAAGCCTGCTTCTTACCATTTCTATTTTTTGCCAACATTGTGTCCATCCTTGTCTGCCCCAACAGGATTTACATGAAGTAAAATGAATGTTCCTACCTCAAACAGGGGAAAAATAAATTGATCATTTTTCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048278 lncRNA downstream 5529 70959601 ~ 70959863 (-) True G921774
TU1048263 lncRNA downstream 32798 70932133 ~ 70932594 (-) True G921759
TU1048235 lncRNA downstream 52394 70897744 ~ 70912998 (-) True LOC118936741
TU1048255 lncRNA downstream 58936 70906154 ~ 70906456 (-) True G921751
TU1048175 lncRNA downstream 152304 70812494 ~ 70813088 (-) True G921676
TU1048383 lncRNA upstream 35799 71063227 ~ 71063678 (-) True G921863
TU1048385 lncRNA upstream 37867 71065295 ~ 71065928 (-) False LOC110533203
TU1048440 lncRNA upstream 66981 71094409 ~ 71094916 (-) True G921915
TU1048485 lncRNA upstream 151146 71178574 ~ 71178923 (-) True G921955
TU1048492 lncRNA upstream 167353 71194781 ~ 71195177 (-) True G921962
XM_036933818.1 mRNA downstream 8634 70897730 ~ 70956758 (-) False LOC118936741
XM_036933827.1 mRNA upstream 4587 71032015 ~ 71051369 (-) False LOC110497308
XM_036933828.1 mRNA upstream 4587 71032015 ~ 71051680 (-) True LOC110497308
trnaa-ugc-47 mRNA upstream 33391 71060819 ~ 71060894 (-) True trnaa-ugc-47
XM_036933838.1 mRNA upstream 37271 71064699 ~ 71121753 (-) False LOC110533203
XM_036933853.1 mRNA upstream 310353 71337781 ~ 71357653 (-) False LOC110497184
TU1048176 other downstream 149090 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 224073 70738835 ~ 70741319 (-) True G921673
TU1047862 other downstream 435930 70527538 ~ 70529462 (-) False G921389
TU1047578 other downstream 610247 70331183 ~ 70355145 (-) True LOC110516757
TU1047378 other downstream 869567 70092861 ~ 70095825 (-) True G920994
TU1048387 other upstream 53478 71080906 ~ 71081512 (-) True LOC110533203
TU1048993 other upstream 568062 71595490 ~ 71597145 (-) True LOC118936934
TU1049024 other upstream 634347 71661775 ~ 71663134 (-) True LOC118936746
TU1049077 other upstream 718387 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 735033 71762461 ~ 71763920 (-) True LOC110514144

Expression Profile