RNA id: TU1048387


Basic Information

Item Value
RNA id TU1048387
length 607
RNA type TUCP
GC content 0.57
exon number 1
gene id LOC110533203
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71064699 ~ 71121753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCTAGAGGAAATACTATCACCTAGCTTTTTGCAGCCGCCACAACGTCCACAAcatcaacagcagcagcagcgccCGCTGTCCCATCCATCTCAGTACGACGGACAGCAGTCGGTCAACGCACCCCAGTCACAGGACCCCAACCAGGGCACGATGGACGGTCAACAGCTGCTGAACAAACTCAAGCTGGAGGACTACATCAGGCTAGAGAAGAAGCTGAAATCCCCTGGTGGAGGCTACAGAGGTCAGGGTGGTCAACCTCAGCCTGGGCACCAGCAGCAGATACAGTCTATGATGAGAAACAACCCTGGGTACAATCCTGTAGACCCCTCTCAGCCCAACGACGCACAGCAGTCCCAGCAGGCGTCATGGAGACACAGCAGCAGTAATAccatggagatggagatggagctgGAGATgaagcagcaacaacaacagcagcaccaACAACAACAGCAGAGGCAGTACACTCCAAGCCCCGGACCCAAGCAATACtcccaccagcagcagcagccgccCCACCTCCGACAACCACACCCCAACCACATGGACTTCCCCCTTACCCAGACCCCCCCACAACCGCTACCTCACTTACCACACGGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048385 lncRNA downstream 14978 71065295 ~ 71065928 (-) False LOC110533203
TU1048383 lncRNA downstream 17228 71063227 ~ 71063678 (-) True G921863
TU1048418 lncRNA downstream 64484 71016209 ~ 71016422 (-) True G921898
TU1048417 lncRNA downstream 64830 71015616 ~ 71016076 (-) True G921897
TU1048406 lncRNA downstream 80968 70999389 ~ 70999938 (-) True G921886
TU1048440 lncRNA upstream 12897 71094409 ~ 71094916 (-) True G921915
TU1048485 lncRNA upstream 97062 71178574 ~ 71178923 (-) True G921955
TU1048492 lncRNA upstream 113269 71194781 ~ 71195177 (-) True G921962
TU1048497 lncRNA upstream 127537 71209049 ~ 71210052 (-) True G921967
TU1048504 lncRNA upstream 140118 71221630 ~ 71221848 (-) True G921974
trnaa-ugc-47 mRNA downstream 20012 71060819 ~ 71060894 (-) True trnaa-ugc-47
XM_036933828.1 mRNA downstream 29226 71032015 ~ 71051680 (-) True LOC110497308
XM_036933827.1 mRNA downstream 29537 71032015 ~ 71051369 (-) False LOC110497308
XM_036933830.1 mRNA downstream 53414 70965392 ~ 71027492 (-) True LOC110497311
XM_036933829.1 mRNA downstream 53430 70965392 ~ 71027476 (-) False LOC110497311
XM_036933853.1 mRNA upstream 256269 71337781 ~ 71357653 (-) False LOC110497184
XM_036933852.1 mRNA upstream 256269 71337781 ~ 71357664 (-) False LOC110497184
XM_036933851.1 mRNA upstream 256269 71337781 ~ 71372279 (-) True LOC110497184
XM_021573148.2 mRNA upstream 293643 71375155 ~ 71377159 (-) True LOC110497174
XM_036989378.1 mRNA upstream 306230 71387742 ~ 71398897 (-) True LOC110518698
TU1048419 other downstream 63977 71016496 ~ 71016929 (-) True G921899
TU1048176 other downstream 264604 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 339587 70738835 ~ 70741319 (-) True G921673
TU1047862 other downstream 551444 70527538 ~ 70529462 (-) False G921389
TU1047578 other downstream 725761 70331183 ~ 70355145 (-) True LOC110516757
TU1048993 other upstream 513978 71595490 ~ 71597145 (-) True LOC118936934
TU1049024 other upstream 580263 71661775 ~ 71663134 (-) True LOC118936746
TU1049077 other upstream 664303 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 680949 71762461 ~ 71763920 (-) True LOC110514144
TU1049956 other upstream 1824065 72905577 ~ 72906292 (-) False G923192

Expression Profile