RNA id: XM_036933850.1


Basic Information

Item Value
RNA id XM_036933850.1
length 2619
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110497179
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71406747 ~ 71435265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACCTATATTCAACAATAAATATCCATAGTCTGGAATACCTCCCTATGTTGTCAGTCTTGATTGTTTAATAACTGCATTATTGTGCAGGTGGCTGGAGCACCACAAAGGACACATTTGTGTGGGTAGAACCATCATTGGATCTGATAGGACAGGATCTAGTTAGAAAACAAGTGGTTTTTCGTGAGGATTCTGCAGAGTTCAATCAGCTCTGGTATGCTGATAGTAATGACCAAGTGAGAGGAGCCAGCACCCCCCTCTGCTTTAAAACCCCAAAACACAGACTACTGCCTGGAAAACAACCAGTTGGTCATCACAACACAGGAACAATACAATCCACAATATCTCAAATCCAAAGATTGTGTTTTGAAGACCATGCGTGAACTACTTGTCTTTAAAAGGCAGCACTCTCTGTTGGGATTGATGATGTTCCTCACAAGAACATATTAGCTAAAATGATCCATAGGAGAGGATATGTACATGACATGATGTGTGTTTCTGAATCTAGGAACAGGTAGagtaaagtgagagagagaaagaagagctgGTCATGGAGATAGAGCAACTGAAAGAGCAACATGAGACTCTGAGAAGTGTCCTGAAGGAGCAACAGCAAGAGATTGATCGCCTCAAGTCTCTGACATCTATTCATGAAAAATATGAACAAGCATTGATCAAGATCCAACAGCTGAAGAAGGAGCAAGAGGAGTTGAAAGGGAAGGTTGAGGTCCAAAGTGTGGAGATTGCACAGCTGACCCCAAGGCTCAAATCTGAGCAGGAGAACCGCAGACTGAAGGATTACATTCAACTTCTACAGGAGGCTCGGACACAGTTGCACCAGGAGCGGCAGGCTTCCAACAACACCCGCAGACGTGCAGAGAAAGCCGAGAGGGAACTGGAGGAGGTCTATGAGCGCATGGAGAGCACTTCCATGACGTCTGCTCAGATCAAGCAGAAGAGCAGCAAACTAGAGATGCAACTTTTAGAGTTACGCAGAATCATTGAGGAGAAAGAAAACATAGCAGAGATGGCTAAAGTAGAAAATGAGGAGTTGTCCAGAGAAAATCAGGACCTCAGAAGAGATATTGAGAGACTTCGCAAGGAGTTCACTGACCTCCAGACTGTGTCCTTGGAGCCTCCCAGCCCTTATGGCTCTCCAGCTGACCCCACCCCTACTGAGGAGCAGCAGCTAGATGTAATATCTGAGACCCCAGACACTGCTCCAAACTCCGAGGAGTTGTCCTTGCAGTGTCGTCACTGCCATGAGTGGTTCCCTGGCATCACCCAGGATGAGCTGGGGCtgcatgaggacagccacagacTGTGTCCCTACTGCACCCTCATCTGTGACGGAGTGGAGCAGACTATATTTGAAGACCACATCTTCAGCCATGAGGAGTTCACTGACCTCCAGGCTGCTCCAGTGTCCATGGAGCATCCCAGCCCTTATGGCTCTCCAACTGACCTCACCCCCACTGAGGAGCAGCAGCTAGATGTACTATCTGCCTGTCTACTCTCTGGGAACCACTATGAGACCCCAGAAACTGCTCCAAACTCCCAGGAGGAAGAGTTGTCCTTGGAGTGTCGTCACTGCCATGAGTGGTTCCCTGGCATCACCCAGGATGAGCTGAGGCtgcatgaggacagccacagacTGTGCCCCTACTGCACCCTCATCTGTGACGGAGTGGAGCAGACTATATTTGAAGACCACGTCTTCAGCCATGAGGTGTAGAGATGCCACATCCTCACAACCATTTATACAGAGAGTTGCTGAGAGTAGACTAAATCTGATACTCTATGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCACCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGATACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGAAACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATAATACTCTACGGATGATGCTCCTTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATAATACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGAAACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGCTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTGAAACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAAGATGATACTCTACGGATGATGTTCCTAACAACCCATCATACAGAGAGTTGCTGAGAGTAGACTAAATCTCATACTCTACGGATGATGTTCCTAACAACCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048883 lncRNA downstream 102582 71303881 ~ 71304694 (-) True G922285
TU1048878 lncRNA downstream 113212 71290083 ~ 71294064 (-) False G922280
TU1048877 lncRNA downstream 113212 71291716 ~ 71294064 (-) True G922280
TU1048876 lncRNA downstream 116148 71290485 ~ 71291128 (-) False G922280
TU1048863 lncRNA downstream 129357 71277685 ~ 71277919 (-) True G922267
TU1048948 lncRNA upstream 63660 71498925 ~ 71499755 (-) True G922329
TU1048953 lncRNA upstream 87039 71522304 ~ 71522614 (-) True G922333
TU1048962 lncRNA upstream 104673 71539938 ~ 71542905 (-) True G922341
TU1049001 lncRNA upstream 176854 71612119 ~ 71722343 (-) True G922374
TU1049004 lncRNA upstream 181500 71616765 ~ 71618259 (-) False G922376
XM_036933847.1 mRNA downstream 2502 71398990 ~ 71404774 (-) True si:ch211-108d22.2
XM_036933846.1 mRNA downstream 2503 71398990 ~ 71404773 (-) False si:ch211-108d22.2
XM_036933848.1 mRNA downstream 2504 71398990 ~ 71404772 (-) False si:ch211-108d22.2
XM_036933845.1 mRNA downstream 2505 71398990 ~ 71404771 (-) False si:ch211-108d22.2
XM_036933849.1 mRNA downstream 2506 71398990 ~ 71404770 (-) False si:ch211-108d22.2
XM_021573154.2 mRNA upstream 3194 71438459 ~ 71440406 (-) True LOC110497178
XM_021573142.2 mRNA upstream 7143 71442408 ~ 71446983 (-) True LOC110497169
XM_021573160.2 mRNA upstream 12580 71447845 ~ 71450759 (-) True LOC110497182
XR_005034221.1 mRNA upstream 37181 71472446 ~ 71476198 (-) True LOC110534568
XM_036933856.1 mRNA upstream 41884 71477149 ~ 71516366 (-) True LOC110515428
TU1048387 other downstream 325764 71080906 ~ 71081512 (-) True LOC110533203
TU1048419 other downstream 390347 71016496 ~ 71016929 (-) True G921899
TU1048176 other downstream 590974 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 665957 70738835 ~ 70741319 (-) True G921673
TU1047862 other downstream 877814 70527538 ~ 70529462 (-) False G921389
TU1048993 other upstream 160225 71595490 ~ 71597145 (-) True LOC118936934
TU1049024 other upstream 226510 71661775 ~ 71663134 (-) True LOC118936746
TU1049077 other upstream 310550 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 327196 71762461 ~ 71763920 (-) True LOC110514144
TU1049956 other upstream 1470312 72905577 ~ 72906292 (-) False G923192

Expression Profile