RNA id: XM_021573142.2


Basic Information

Item Value
RNA id XM_021573142.2
length 3863
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC110497169
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71442408 ~ 71446983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTttgcgtttaaaaaaaaaaaatgtagcatTACATCACGGTATGAAACAGGAGGCCAACTCCAAAGAGTGTGGTAAACAACTAAATTAATTTACTTCTCTTTAGTACATATGGAAATAGTGAAATATGAAAAGATAATGAGAGGTCTTGAGTGTTGTCGCCGACAGGATTCCTAGACATTTGCCTCGGATCCCCGGCTTTTTTTTTGACTATCACCATGGCAGCAGCAAAGATGACCTTACGGCTACGCAAGAAGAGTGCCCTGGACAAGTCCTCTGAGGTTTTGTCTGCCGAGGCGTCTCCAGACTCTAAGTGCCCCATCTGTCTGGACCGATTCAACAACATGGCCTACCTCGATCTCTGCTTGCACAAGTTCTGCTTCCGCTGCATCCACGAGTGGTCCAAGAACAAAGCTGAGTGCCCGCTATGCAAGCAGCCATTCAACTCTATCTATCACAGTATACAATCAGAGAAGGACTTCAAGAAGTATGACCTGCGGCCCACGGAGAACGGTTCCTTTGGGAGTTTCGCAGGGGAACGGTTCCGCTACCGCACCACGCTGACGGGGGCGCGTCGGCAGGACCAGAGAAGAACATCCCCTCCCCCCGACAACGGGGTCATGTTCGAGGCCCTAACGGGGGCTTCCCCCCCTCCTCGACAGGACCGAGGCCTCCGCCGCATGATGGCGCGCCTGGCGGCCAGGAGGCGGGCAGAAAGCGAGGGCCGGACCGTGCGCAGCCTCCGTGAGCAGGAGATGATCAAGTTCAGACGGGCGCTCTACCGGCGAGGGGTGCGAGTGCGGAGCGTGCGAGACGGTGGCCGTTCCCGGGACATCTCGGCGGAGTTCTTTCAGAAGAACCCGGCCTGCCTGCACCGCCTGTTGCCCTGGCTGAAGAGAGAGCTGGTGGTGCTGTACGGCGCTCACGGCTCCCTGGTCAACATCGTGCAGCACATTATCATGTCCCGCATCACCCGCTATGACATGGAGGACCGGGCCATCCACGAGGAGCTGCAGCCTTTCCTCCAGGCCCGCACCGATCACTTCCTGCATGAGTTTGTCAACTTCGCCCGAGCACCCTTCAACATGGAGGCCTACGACCAGCATGCCGTCTACGACTGCCCTGCGCCGTCCTCGGACGAGGGCAGCAGCTCCAACTCCTCGGTGATTGCCATCTccgaggatgaggaggagggcgaTTCTGTGGAGCTGGACCCCATGTCCGGGGGCGCCCTGAGCCAGTCAACATGGGACGACGAGACACCCGGACCTTCGTACTCCACAACAGAACCCACCAGGGCCCTGCTGCTATCCATCAGAGACTCTGACTCAGAGAGCAGTGTGGGGGAGGAGTGCGGAGCAGTGTTACAGCCAAAGACCCCTCGCCTGACTGCGGACTCTGCTTGGGTGAAAACCGACAAGGACGGACAGGCGTGTACCTCCTCTGGCGATGAGGATTGCATCATCGTGGGCTTTGTAAAACCCCTTGCTGAAAGGACCCCGGAGCTGGTCAAGCTGTCCTCTGACTCAGAGGAGTCTGTTCTGGAGGAGATCAAAGATGAAGTGCCCAGGCTGCTTCAACACATCCGCTTCACCAGCCTTAGCCCCGCCTCCTCTCAAGGCCAATGTCCTGGGAAGGCAGAGGGGGTGGAAAGGAAGCAAGATGTATCGTGCTCCAAGGAGAGACGTAACACCTCACCCTCAATTAGATGTGAGTCATCATCTAGTAAGTCAGCAAGCAAAAACAGAGGACAAACTGAGAAAGACGGCAGGAGATGTCACAGTCGAGATAGCTCTAGAGAGAGGCCACGGTCGAGAAGCAGAGACCGGGGGAGGAGGTCCAGGAGCGCCGACCGCAGCCGCTCGACCAAGAGCCCGGCTATCTCCATCAACAGCGACAGCACTCTGTCCAGAGGCAGGAGGCAGTCACGCTCCCAAAGCCGCGACCGCTCCCACACTAAATGGGAGAAGACGAGGGACAATAAAGATAGCAGCCGATCAGGCCGCAGCCACGACTCATCGTCACACTCCTATCACTGGCACTACTACAGccgggagagtgagagggacagcAGTGCCATGCTCTACACAGAGAGGAGGTCCTACTACTCCAGCTCACACAGGAACATCGATTGCAGGTCCCCGAGCCAGAGTCCTGATTCCCACCGGCGGGATAAGAGGCGCTCCAGAAGTCGTTCCAGCACCTGTTCGCCGTCCGGCGCTCACAGGAAGTCTCGTCACGAGAAGCCCAGCGGGAAGAGAAAGTACAAATCGAGACACCTGGAGGAACCTTCCCCCAAAGACCAGTCCTCCATAGCCCTCGACGagcctccctcctccaccacctcgtCCTATGTGAAAGACAAGAAGAAGAGCAAAGAGAAGCGTCACAGGAAGTCCAAGGAGAAGTCTGGGGGGAAGAGGAGCAGGAGCCTCAGCGTGGAGATCATCTTTGAGGGCAGCTCCTCAGAGCAAACCAGGAAGcaccagaagaagaagaagaagcacaaGAAGAAGGGCAAGAGGCACAGGAGCAAAGAGCGCACAGGGTCCAGGAAACACTCGCCCACTGTCATTACCATAGACAGCGACAGTGACCAACATACTGCCGAAGGCGCTAACGATGCTAACCACACCTGCCCGGTAAGCAGCAGCACAAGCAACAGCGTGCTAGCGCCTagcacaaccaccaccacagGCAACCCTGCAGACTCTGGCCTGCTGGAGTCCATGTTACAAGACTGGGAACAGCAGATTCCACCTGTGGGTCTGGACAGTGGAGTGCTGGAGGCCAAGCCTCCTATAAATGTTGCTGCTGCTTctgacacacccacacagagtgaGGGGGTTCTGTCCCAATCTGCCTCTGCGGATGAGGCAAACTCTCATAGCCCTTCAAATGacaacacaagtcattttttggaAGAATCATAATGCTGGCCTCGGTGGGTAGGAAGACATTTAATTTACCTTTAAAAGTTAGTTTTACACCTCACTATGTAGGATGTTATATGTACTGTTCTGCCAAAAGGTGCTCTTTCATTTGGGATGTGCCACTTTGCTGTATGAGGTTAAAAAAAAAGGGGGGTCAAAGATTGGGTTTTATttgtcttatttacagtgactgtCTGTAAGGCCTACATTTAAAAAGTATTTGTATAAAATACTTCAACTAATTTCTTATCAGTCATTCATTTCTATGCATCATTCTCAGGGATAACATGGGCAATAAAGCTGATGTAGCTTGTACCGTTGTGTTGAAACCAAACACCTTGTCTACCTGCTGTTCTTGTAATCTGATGGAAAACTGCTCTTAATACTAGCCAATAAATCAATATGGGAATGGGAAAGACTGTTGTTGTAACTGTGGAGTTGTAAATAGTAATAAATGTTTCAAAACTGAAATCAACAGCTGATATGACCTCCTGAATAAGTCAGCATTGGCCAGTGGCTCGTCGTTGGAGGCCACATATGTAATGGTTACTGCCTGAGTGGGTATCCTTTCATGTGGATGGCATGAGAGTTCTAGAACCTTACAGATGCTACTACGATTAAGATGCTAACACGTTACTGAAGCTGATTCTAGTGTGATAAAGGAACATCAACTTGCCAGTGGTGCAATAAACATTTTGAAAGTAAGAAGTATCATAATGTCCCCATTAGATTAGGCTTCTTATCTGAGTGGGCACGGTTGCTTTTCATTTGAGATTTGATAAAAATGATGCTACGCTGTTGGGACAAGACAagagtggcgattttagcatgtaaatcttggtggggcaaactcaaaatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat

Function

GO: NA

KEGG:

id description
K10631 TOPORS; E3 ubiquitin-protein ligase Topors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048911 lncRNA downstream 32396 71406747 ~ 71410012 (-) True LOC110497179
TU1048883 lncRNA downstream 137714 71303881 ~ 71304694 (-) True G922285
TU1048878 lncRNA downstream 148344 71290083 ~ 71294064 (-) False G922280
TU1048948 lncRNA upstream 51942 71498925 ~ 71499755 (-) True G922329
TU1048953 lncRNA upstream 75321 71522304 ~ 71522614 (-) True G922333
TU1048962 lncRNA upstream 92955 71539938 ~ 71542905 (-) True G922341
TU1049001 lncRNA upstream 165136 71612119 ~ 71722343 (-) True G922374
TU1049004 lncRNA upstream 169782 71616765 ~ 71618259 (-) False G922376
XM_021573154.2 mRNA downstream 2002 71438459 ~ 71440406 (-) True LOC110497178
XM_036933850.1 mRNA downstream 7143 71407276 ~ 71435265 (-) False LOC110497179
XM_021573147.2 mRNA downstream 10689 71428009 ~ 71431719 (-) True LOC110497173
XM_036933847.1 mRNA downstream 37634 71398990 ~ 71404774 (-) True si:ch211-108d22.2
XM_036933846.1 mRNA downstream 37635 71398990 ~ 71404773 (-) False si:ch211-108d22.2
XM_021573160.2 mRNA upstream 862 71447845 ~ 71450759 (-) True LOC110497182
XR_005034221.1 mRNA upstream 25463 71472446 ~ 71476198 (-) True LOC110534568
XM_036933856.1 mRNA upstream 30166 71477149 ~ 71516366 (-) True LOC110515428
XM_036934587.1 mRNA upstream 148169 71595152 ~ 71597024 (-) False LOC118936934
XM_036989380.1 mRNA upstream 150232 71597215 ~ 71602590 (-) True LOC118966646
TU1048387 other downstream 360896 71080906 ~ 71081512 (-) True LOC110533203
TU1048419 other downstream 425479 71016496 ~ 71016929 (-) True G921899
TU1048176 other downstream 626106 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 701089 70738835 ~ 70741319 (-) True G921673
TU1047862 other downstream 912946 70527538 ~ 70529462 (-) False G921389
TU1048993 other upstream 148507 71595490 ~ 71597145 (-) True LOC118936934
TU1049024 other upstream 214792 71661775 ~ 71663134 (-) True LOC118936746
TU1049077 other upstream 298832 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 315478 71762461 ~ 71763920 (-) True LOC110514144
TU1049956 other upstream 1458594 72905577 ~ 72906292 (-) False G923192

Expression Profile