RNA id: XM_036933856.1


Basic Information

Item Value
RNA id XM_036933856.1
length 1312
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110515428
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71477149 ~ 71516366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCAGTTGATATGAATCTGGCTGGGAGTCCCAAAGACTCAGAACTGAACATAGACGTTCATATCGACCTAACACAGTTttagtttttatttcatttttgtctcatattattttttttatacattagctgtatatttgtgtatatagatattattttatatttttatacaaGTCAACAAGATGGAACTTAATTCTCTTTTAATTCTCCTGGAGGCTGCAGAATACTtggaaagaagagacagagAAGCAGAACATGGTTACGCGTCTGTTTTACCGTACAATAGCGACTTTTCCCGAAAGAAAACGAAAGCTTCACCAATTTCAAGAAAAACTCAGAACAATAGATCGTCACACAACGAGCTGGAGAAACACAGACGTGCCAAACTACGGCTGTACCTTGAGCAGCTGAAGGAGCTGGTTCCTTTGGGTCCGGACAGCACTAGACACACCACACTGAGCCTGCTGAAAAGGGCCAAGATGCACATCAAGAAGCTGGAGGAGGCGGACAGAAAGGCTCTGAACACCAAAGAGCAGCTCCAGAGAGAGCACCGCTACCTCAAACgacgtctggaacagctggtgatGCCTGGAGGCGTGGAACGTACCCGAACCGACAGCCTAGGCTCCACCATCTCCACCGACTCAGAGCAAGaGGTGGACATTGAAGGAATGGAGTCCCCCCTGGGCGAGGGTGAGCTTGGCGAGGGCGAGGGGGACAGCGTGGACGAGAGCATCAGTGACGACGGCCTCCTGGacggcgaggaggaggaggactacAACCTGCAGAGCAGCTCCAGCGACGCCAGCTACACACAGCATTCCTCACACAGACTGCAGCCGCACCACTGCTAGGGGCCACCAGGGGGCCCCTGAGGGCCACACCTCCAATCAGCCCTCTATGACCCCAGCCCCGCGTACCCTCCTATTCCCTTCCTACCCCCCCTAACATTGCCCCAGCACGCACCCCCTCCAGCCCACGCCACGTGGTCATCAGCCACCCCCCCAGCAAACAGCGGCTGTGGTCTCCCCCTCCCCAATGTCCCCATTGGCGCTTATTCCCTGGAACCAGGAAGTAGACTGTAGACGTTCCTGTCGTGGCTGACTTCCTGACTTTTTCCTgtcctaacccctacaccacaCCCTACCTCACCCCTATCCTATCACCCCTTATCCCGCTTATCTTGCCTAACCTGACCCCcagacctccctcacctctacCTGTTGTGGCTGCAGGCTCGGATATAGCAGAGCAGTTTGTGGTTTTGTTGGGGACCTCTGTGGTGTGGTGGCAGACAGCTTTGACTTGTCAATG

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09114 MXD, MAD; MAX dimerization protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1048911 lncRNA downstream 67137 71406747 ~ 71410012 (-) True LOC110497179
TU1048883 lncRNA downstream 172455 71303881 ~ 71304694 (-) True G922285
TU1048878 lncRNA downstream 183085 71290083 ~ 71294064 (-) False G922280
TU1048953 lncRNA upstream 5938 71522304 ~ 71522614 (-) True G922333
TU1048962 lncRNA upstream 23572 71539938 ~ 71542905 (-) True G922341
TU1049001 lncRNA upstream 95753 71612119 ~ 71722343 (-) True G922374
TU1049004 lncRNA upstream 100399 71616765 ~ 71618259 (-) False G922376
TU1049005 lncRNA upstream 100399 71616765 ~ 71618259 (-) False G922376
XR_005034221.1 mRNA downstream 951 71472446 ~ 71476198 (-) True LOC110534568
XM_021573160.2 mRNA downstream 26390 71447845 ~ 71450759 (-) True LOC110497182
XM_021573142.2 mRNA downstream 30166 71442408 ~ 71446983 (-) True LOC110497169
XM_021573154.2 mRNA downstream 36743 71438459 ~ 71440406 (-) True LOC110497178
XM_036933850.1 mRNA downstream 41884 71407276 ~ 71435265 (-) False LOC110497179
XM_036934587.1 mRNA upstream 78786 71595152 ~ 71597024 (-) False LOC118936934
XM_036989380.1 mRNA upstream 80849 71597215 ~ 71602590 (-) True LOC118966646
XM_036933860.1 mRNA upstream 141978 71658344 ~ 71665901 (-) False LOC118936746
XM_036933862.1 mRNA upstream 141978 71658344 ~ 71665901 (-) False LOC118936746
XR_005034222.1 mRNA upstream 141978 71658344 ~ 71665901 (-) False LOC118936746
TU1048387 other downstream 395637 71080906 ~ 71081512 (-) True LOC110533203
TU1048419 other downstream 460220 71016496 ~ 71016929 (-) True G921899
TU1048176 other downstream 660847 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 735830 70738835 ~ 70741319 (-) True G921673
TU1047862 other downstream 947687 70527538 ~ 70529462 (-) False G921389
TU1048993 other upstream 79124 71595490 ~ 71597145 (-) True LOC118936934
TU1049024 other upstream 145409 71661775 ~ 71663134 (-) True LOC118936746
TU1049077 other upstream 229449 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 246095 71762461 ~ 71763920 (-) True LOC110514144
TU1049956 other upstream 1389211 72905577 ~ 72906292 (-) False G923192

Expression Profile