RNA id: XM_036934587.1



Basic Information


Item Value
RNA id XM_036934587.1
length 971
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC118936934
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71595152 ~ 71597145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTAGACTagtactgtagtagactgtagacaGTGTGGTGGACTGTAGAGGAAATGAGAATCCTATGATCACATGTGTTTTCTTACAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCACTACATTAGTGACATATTGCATGCCAGTGGAAACTGGTTCTGCTGTAACGACAGCCAGGTGTCAATGTCCAATGAAGCCACTGTGCTGAGGACCAGAGCCCGGAGTGCCTACATGCTCTTCTATATGTTCAGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGCCTAAACAGGGGCAGCACCTGGACCAGCCTCCAAACACTCAGACCTGTCTCAACAGGGGTGGTACCAGGCCCAGCCTCAaaacccccagcccagcctcaacACTCACACACCTGCCTCGAAAGGGGTAGCACTTGGCCCAACATCAACAACCCCGAGCCCAGCCACAACAGGGGCAGCACTGGGCCCAACATCAACACACCCAGCCCAGCCTCAACATGGGAAGAACCAGGCCCAGTCTCAACATGGGCAGAACAAGACCCAGCCCCAACACCCTCAGACTTGCCTCAATAATGTGATTGGGATGCTTAATATCAACAATGTTTACAATGACGCCACACCCTTACTGTACCACTGTGACCTGTCACTATTAAAGGCTGTGTGACGTGACATACTGTCTTTTCTTATCTCACGTACACTCCTttacgtatttatttggacagtgaagctacaaCTTTTCATTTGGCTCTATACGCCAGCGTTTTGGattggagatcaaatgtttcatatgtggtgactgtacagaatgtcacctttaatttaatgaatggtaaataatgttgagtgagaaagttacagaggatcatacccccaagacatgctaacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1048962 lncRNA downstream 52247 71539938 ~ 71542905 (-) True G922341
TU1048953 lncRNA downstream 72538 71522304 ~ 71522614 (-) True G922333
TU1048948 lncRNA downstream 95397 71498925 ~ 71499755 (-) True G922329
TU1048911 lncRNA downstream 185140 71406747 ~ 71410012 (-) True LOC110497179
TU1048883 lncRNA downstream 290458 71303881 ~ 71304694 (-) True G922285
TU1049001 lncRNA upstream 15095 71612119 ~ 71722343 (-) True G922374
TU1049004 lncRNA upstream 19741 71616765 ~ 71618259 (-) False G922376
TU1049005 lncRNA upstream 19741 71616765 ~ 71618259 (-) False G922376
TU1049007 lncRNA upstream 20498 71617522 ~ 71618259 (-) True G922376
TU1049023 lncRNA upstream 61896 71658920 ~ 71660615 (-) False LOC118936746
XM_036933856.1 mRNA downstream 78786 71477149 ~ 71516366 (-) True LOC110515428
XR_005034221.1 mRNA downstream 118954 71472446 ~ 71476198 (-) True LOC110534568
XM_021573160.2 mRNA downstream 144393 71447845 ~ 71450759 (-) True LOC110497182
XM_021573142.2 mRNA downstream 148169 71442408 ~ 71446983 (-) True LOC110497169
XM_021573154.2 mRNA downstream 154746 71438459 ~ 71440406 (-) True LOC110497178
XM_036989380.1 mRNA upstream 191 71597215 ~ 71602590 (-) True LOC118966646
XM_036933860.1 mRNA upstream 61320 71658344 ~ 71665901 (-) False LOC118936746
XM_036933862.1 mRNA upstream 61320 71658344 ~ 71665901 (-) False LOC118936746
XR_005034222.1 mRNA upstream 61320 71658344 ~ 71665901 (-) False LOC118936746
XM_036933866.1 mRNA upstream 131807 71728831 ~ 71734927 (-) False LOC118936748
TU1048387 other downstream 513640 71080906 ~ 71081512 (-) True LOC110533203
TU1048419 other downstream 578223 71016496 ~ 71016929 (-) True G921899
TU1048176 other downstream 778850 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 853833 70738835 ~ 70741319 (-) True G921673
TU1047862 other downstream 1065690 70527538 ~ 70529462 (-) False G921389
TU1049024 other upstream 64751 71661775 ~ 71663134 (-) True LOC118936746
TU1049077 other upstream 148791 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 165437 71762461 ~ 71763920 (-) True LOC110514144
TU1049956 other upstream 1308553 72905577 ~ 72906292 (-) False G923192
TU1049957 other upstream 1308553 72905577 ~ 72925734 (-) False G923192

Expression Profile