RNA id: XR_005034222.1


Basic Information

Item Value
RNA id XR_005034222.1
length 2429
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC118936746
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71658344 ~ 71665901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTTTGAGTTTCCGGTAAACTCTTTGTTTCCTTTCATGTGTCCAACCAATTATTATTGGGTTATTCACCATGGCAACCAGTGAAATGTATTTCTGAGTTAGGTTGGCTTGTTTTCAGAATTCACAACGAAATGCCTCCAGCTGTCCATCACCACTGTAAATATAAagagtggttatagaggAAAAAACGTCAGAAAGCAAATTCAGTTGATGTGGAGCAGAAGACAAGAAAGAAGAAGGAGAGGGGcacttcatccccctctccaatTCCATCTGACCGTTCTGAACGGAATGGCTCCGCTACCTCTGACCCCTCACCCTCTGAccaactctcctccctccatccacctccctctcctgttAAATGTTCCTCTCAGCCTTGCTCTCCTGCTAAACAACCCTCTGTACCCCGGTCACCTGCCAAAAACCCTTCCCCAGTGAAATCCTCTCCAGTGGTGTCCCAGCCTAGTTCTCCCTCTCCTACCAACCCTCTGGACCGTCATGGAGACACCAGTCAGGAGGGCACAACAGTCAGaccTCTGTCTCTTCAGGAACACTCTAGTCCAATGCCCCAGAGACCAGTCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAGGGTCAGAAGAGACCCAGGGGGCCAGAGGAGAACGGGGGGAACTGGTCAACATGGAACTTCTTGGGTTGCCTAACATTGGCAACACTTGCTTCCTTAACGCCACCCTGCAGTGCCTCCTGGTCCTGCCTTCCTTCTCAAAGGAAATCCTGCACCAGGAACAACTCTGgagctcctcccccttctccaacCTGCTCAGGTGTCTGTCTGATGTGCACCGTTCGGGTCTACCTGACAGTGTGGCAAACCAGGCCTCAAAAGCAGACCTCATGTGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTATCTGGGGGACACGCAACAGGACGCACACGAGTTACTTGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACATTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCAAATGTACCAGCTGTGGGCGCGAGTCGTCCACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAAGTGAACAGGTTGAATTCACATGTGAGGGCTGTAAAGGCCTCCACGCCTCAAAGGTGGAGCAGTTCCACACACTGCCTCTTGTGCTGGTTCTGCATCTGAAGAGGTTTGGAGGACTTGGGGGGTTGGAGAAGCTGGAGGCTCCTCTTTTGTTTCCTTCGGAGCTGAGGCTCTCCACCCTCTATGGGGACATGGTGCCACACCTGCACAGTGCCAGCCCACAGGCCCTCACCAACCAGGCCCCCAGCATCCAGGGGTCCATCCCCCAGACCTTTGCCAGCCAAGTCTCCAGCCCACCTGGAGCGGCCAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCACTACATTAGTGACATATTGCATGCCAGTGGAAACTGGTTCTGCTGTAACGACAGCCAGGTGTCAATGTCCAATGAAGCCACTGTGCTGAGGACCAGAGCCCGGAGTGCCTACATGCTCTTCTATATGTTCAGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGCCTAAACAGGGGCAGCACCTGGACCAGCCTCCAAACACTCAGACCTGTCTCAACAGGGGTAGTACCAGGCCCACTCTCAaaacccccagcccagcctcaacCCTCACACACCTGCCTCAAAATGGGTAGCACTTGGCCCAACATCAACAACCCCGAGCCCAGCAACATCAGGGGCAGCACGGGGCCCAACATCAACACACCCAGCCCAGCCTCAACATGGGAAGAACCAGGCCCAGTTTCAACATGGGCAGAACAAGACCCAGCCCCAACACCCTCAGACCTGCCTCAACAGGTGCAGCATTCGGCACAACTTCAATCATGCTGCTCTTCAACACTAGCATGAACATTCTTTCAGTAGCTTATGTCATAAATACCTGCCCTTGATTTGACTACTTCACCTAATGTATAAACGTATAAAGTATACACACTAAATGTAGTACACATGTAGATGTGGTGGATAGAGAGTGTGATTATTTAGAGGATATAACATCCCTTCTATTTGGTTTGGTTTGAAATCCTCCTGTTGTGAAATACACTGTGGTGTCTAACCTCTTTTTCAGCATGGTCACACCGGAAGACCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1049004 lncRNA downstream 40085 71616765 ~ 71618259 (-) False G922376
TU1049005 lncRNA downstream 40085 71616765 ~ 71618259 (-) False G922376
TU1049007 lncRNA downstream 40085 71617522 ~ 71618259 (-) True G922376
TU1048962 lncRNA downstream 115439 71539938 ~ 71542905 (-) True G922341
TU1048953 lncRNA downstream 135730 71522304 ~ 71522614 (-) True G922333
TU1049058 lncRNA upstream 44397 71710298 ~ 71711040 (-) True G922411
TU1049070 lncRNA upstream 63393 71729294 ~ 71731134 (-) True LOC118936748
TU1049076 lncRNA upstream 79990 71745891 ~ 71747884 (-) False LOC110534950
TU1049079 lncRNA upstream 81735 71747636 ~ 71762259 (-) False LOC110514144
TU1049080 lncRNA upstream 82398 71748299 ~ 71748631 (-) True LOC110534950
XM_036989380.1 mRNA downstream 55754 71597215 ~ 71602590 (-) True LOC118966646
XM_036934587.1 mRNA downstream 61320 71595152 ~ 71597024 (-) False LOC118936934
XM_036933856.1 mRNA downstream 141978 71477149 ~ 71516366 (-) True LOC110515428
XR_005034221.1 mRNA downstream 182146 71472446 ~ 71476198 (-) True LOC110534568
XM_021573160.2 mRNA downstream 207585 71447845 ~ 71450759 (-) True LOC110497182
XM_036933866.1 mRNA upstream 62930 71728831 ~ 71734927 (-) False LOC118936748
XM_036933867.1 mRNA upstream 78867 71744768 ~ 71752698 (-) False LOC110534950
XR_005034224.1 mRNA upstream 78867 71744768 ~ 71752698 (-) False LOC110534950
XM_036933868.1 mRNA upstream 79939 71745840 ~ 71752698 (-) False LOC110534950
XR_002475140.2 mRNA upstream 93704 71759605 ~ 71761025 (-) True LOC110534519
TU1048993 other downstream 61199 71595490 ~ 71597145 (-) True LOC118936934
TU1048387 other downstream 576832 71080906 ~ 71081512 (-) True LOC110533203
TU1048419 other downstream 641415 71016496 ~ 71016929 (-) True G921899
TU1048176 other downstream 842042 70746687 ~ 70816302 (-) True G921677
TU1048167 other downstream 917025 70738835 ~ 70741319 (-) True G921673
TU1049077 other upstream 79914 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 96560 71762461 ~ 71763920 (-) True LOC110514144
TU1049956 other upstream 1239676 72905577 ~ 72906292 (-) False G923192
TU1049957 other upstream 1239676 72905577 ~ 72925734 (-) False G923192
TU1051061 other upstream 1964241 73630142 ~ 73631970 (-) True G924041

Expression Profile