RNA id: XM_036933866.1


Basic Information

Item Value
RNA id XM_036933866.1
length 3135
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC118936748
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 71728831 ~ 71734927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCAGCAACCTTGTGTTATGCCTTCCATTCAACACCAATTTATCACCTAGCAAGTGTATTTAACACGCACTGGGCACTGTAAGCTCTGCCCACTGACCATTGAGCTTTAATTGAACCAATCACATTCATTATGTCCTTGAGACAGAGCTGCCCTCAGGGCAAGATTGAATACGGAAAACTGTCCCTAACCAATCTGGATTGTTGTTTGAGGTTTAGGCTAAATCTCTACCACCTGTTCACATTCTTTTAAACCAACCCTTTGTCCATCTGCTGGTGAACAAGAGAAAAAGCATTTAGCATTTAAATAAACCGATAACCAAACCAAAAACAACATGGAAGCTATCAAAAAACTATGAAGATGAAGATGAAGGCActtaaaatgcctttattgtgGTCGTACGTTTAATGAAACAACATAcaaaaaatgaatgtaaaaagAAACAAGAATACAATGGAGCATATTATCTACAATATTGTATGTATACTGCATAACTTTGCTCTTCAGTAAAACAGATTTGTTCATTGAacaatatattttaaaatgttatagATTGGGTTGCCAGGTGGTGGTGTCATACATGACCGATGACATCACAATGGTCTTAAAGCCAATTTGAACAATGGGTTAATGTGGAAATGTATCAGTCTTCATTGGTTATCGACATGGCTTGTTTCTGCTGGTGCAAAAAGGTATGAAATCAGGTCATTTAATCAATGAACAACTACTATAATTCTGGAGTAGTATGTTTCTCTTAAACCTAGTGGGAAGAATAAAAGTAAAATTACATTCTGATTGACGAATACGTAAAAAGTGTACATGAAATGTACATGAAGTTCTGCTATTGCAAATGTCACTCAATGTAACCTGTCTATACTGTGTTATTTGAGGTTTAGGATAGATACCTATGATTCTCCATTTAGGCCAACCTCTTCCTACTCTTATGACCCCCCTCTTCCATTGGCTGGGGATCTGGGGGGGAAAGTATTTAGCACTATCACATTTTCTTGTCAACAGAAAAAACGTCAGAAAGCAAATTCAGTTGATGTGGAGCAGAAGACAAGAAAGAAGAAGGATAGGGGcacttcatccccctctccaatTCCATCTGACCGTTCTGAACGGAATGGCTCCGCTACCTCTGACCCCTCACCCTCTGACaaactctcctccctccatccacctccctctcctgttAAATGTTCCTCTCAGCCTTGCTCTCCTGCTGAACAACCCTCTGTACCCCGGTCACCTGCCAAAAACCCTTCCCCAGTTAAATTCTCTCCAGTGGTGTCCCAGCCTAGTTCTCCCTCTCCTACCAACCCTCTGGACCGTCATGGAGACACCAGTCAGGAGGGCACAACAGTCAGacTTCTGTCTCTTCAGGAACACTCTAGTCCAATGCCCCAGAGACCAGTCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAGGGTCAGAAGAGACCCAGGGGGCCAGAGGAGAACGGGGGGGAACTGGTCAACATGGAACTTCTTGGGTTGCCTAACATTGGCAACACTTGCTTCCTTAACGCCACCCTGCAGTGCCTCCTGGTCCTGCCTTCCTTCTCAAAGGAAATCCTGCACCAGGAACAACTCTGgagctcctcccccttctccaacCTGCTCAGGTGTCTGTCTGATGTGCACCGTTCGGGTTTACCTGACAGTATGGCAAACCAGGCCTCAAAAGCAGACCTCATGTGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTATCTGGGGGACACGCAACAGGACGCACACGAGTTACTCGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCACATGTACCAGCTGTGGGCGCGAGTCGTCCACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAAGTGAACAGGTTGAATTCACATGTGAGGGCTGTAAAGGCCTCCACGCCTCAAAGGTGGAGCAGTTCCACACACTGCCTCTTGTGCTGGTTCTGCATCTGAAGAGGTTTGGAGGACCTGGGGGGTTGGAGAAGCTGGAGGCTCCTCTTTTGTTTCCTTCGGAGCTGAGGCTCTCCACCCTCTGTGGGGACATGGTGCCACACCTGCACAGTGCCAGCCCACAGGCCCTCACCAACCAGGCCCCCAGCATCCAGGGGTCCATCCCCCAGACCCTCGCCAGCCAAGTCTCCAGACCACCTGGAGAGGCCAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCACTACATTAGTGACATATTGCATGCCAGTGGAAACTGGTTCTGCTGTAACGACAGCCAGGTGTCAATGTCCAATGAAGCCACTGTGCTGAGGACCAGAGCCCGGAGTGCCTACATGCTCTTCTATATGTTCAGGTACTGCTTACTCTCGCCATCTATATTCTTGTGTTGCTATTTATGTGTACGGTTCCTTTCACCCTACCGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGACTAAACAGGGGCAGCACCTGGACCAGCCTCCAAACACTCAGACCTGTCTCAACAGGGGTGGTACCAGGCCCAGCCTCAaaacccccagcccagcctcaacCCTCACACACCTGCCTCGAAAGGGGTAGCACTTGGCCCAACATCAACAACCCCGAGCCCAGCCACAACAGGGGCAGCACTGGGCCCAACATCAACACACCCAGCCCAGCCTCAACATGGGAAGAACCAGGCCCAGTCTCAACATGGGCAGAACAAGACCCAGCCCCAACACCCTCAGACTTGCCTCAATGATGTGATTGAGATGCTTAATATCAACGATGTTTACAATGACGCCACACCCTTACTGTACCATTGTGACCTGTCACTATTAAAGGCTGTGTGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1049001 lncRNA downstream 6488 71612119 ~ 71722343 (-) True G922374
TU1049058 lncRNA downstream 17791 71710298 ~ 71711040 (-) True G922411
TU1049023 lncRNA downstream 68216 71658920 ~ 71660615 (-) False LOC118936746
TU1049004 lncRNA downstream 110572 71616765 ~ 71618259 (-) False G922376
TU1049005 lncRNA downstream 110572 71616765 ~ 71618259 (-) False G922376
TU1049076 lncRNA upstream 10964 71745891 ~ 71747884 (-) False LOC110534950
TU1049079 lncRNA upstream 12709 71747636 ~ 71762259 (-) False LOC110514144
TU1049080 lncRNA upstream 13372 71748299 ~ 71748631 (-) True LOC110534950
TU1049048 lncRNA upstream 61268 71796195 ~ 71849264 (-) True G922407
TU1049037 lncRNA upstream 99806 71834733 ~ 71836224 (-) True G922404
XM_036933860.1 mRNA downstream 62930 71658344 ~ 71665901 (-) False LOC118936746
XM_036933862.1 mRNA downstream 62930 71658344 ~ 71665901 (-) False LOC118936746
XR_005034222.1 mRNA downstream 62930 71658344 ~ 71665901 (-) False LOC118936746
XM_036989380.1 mRNA downstream 126241 71597215 ~ 71602590 (-) True LOC118966646
XM_036934587.1 mRNA downstream 131807 71595152 ~ 71597024 (-) False LOC118936934
XM_036933867.1 mRNA upstream 9841 71744768 ~ 71752698 (-) False LOC110534950
XR_005034224.1 mRNA upstream 9841 71744768 ~ 71752698 (-) False LOC110534950
XM_036933868.1 mRNA upstream 10913 71745840 ~ 71752698 (-) False LOC110534950
XR_002475140.2 mRNA upstream 24678 71759605 ~ 71761025 (-) True LOC110534519
XM_036989382.1 mRNA upstream 26492 71761419 ~ 71765505 (-) False LOC110514144
TU1049024 other downstream 65697 71661775 ~ 71663134 (-) True LOC118936746
TU1048993 other downstream 131686 71595490 ~ 71597145 (-) True LOC118936934
TU1048387 other downstream 647319 71080906 ~ 71081512 (-) True LOC110533203
TU1048419 other downstream 711902 71016496 ~ 71016929 (-) True G921899
TU1048176 other downstream 912529 70746687 ~ 70816302 (-) True G921677
TU1049077 other upstream 10888 71745815 ~ 71747884 (-) False LOC110534950
TU1049088 other upstream 27534 71762461 ~ 71763920 (-) True LOC110514144
TU1049956 other upstream 1170650 72905577 ~ 72906292 (-) False G923192
TU1049957 other upstream 1170650 72905577 ~ 72925734 (-) False G923192
TU1051061 other upstream 1895215 73630142 ~ 73631970 (-) True G924041

Expression Profile