RNA id: XM_036933878.1


Basic Information

Item Value
RNA id XM_036933878.1
length 2395
RNA type mRNA
GC content 0.55
exon number 14
gene id LOC110497295
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72648336 ~ 72661638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACGTGATTTGTAGATAGTTCAATCCGCAGTCATTTGATGCTCTCGAATACGGCCAATACTTGCCAATAAGATCCGTGTTGTTGTGTTTTCACtagatagcacagccacaaagttatgtcgtaaaaatgtatgaaaacaaaaatgagaaTTTTGGTCTTCattcaaggttagggttaggtacaatGTTAGCAGCGTGGTTAAAGTTACGGTTAAGGTCAagtttaaaataacattttaagaagataaattgtagaaataggcggggtttatgagTTTGTGGCTGGGGTAACTAGTAACGACCGTGTTGTCATAATCACCCATCCGTACCCGAGTGGGTGCAGGGTGATTCTCCTATTGTACAGAATAGGATAGGGGGAACCATGGCATACTTGCGAGGCGCCCCATCTAATATCCAACGCACAGAGAATATGAATTCTGCGCGATTTTTGTGCTGAGCCAAGATCCTCAATTTTAAAACACAAAACCAGGACCTCGGATTATTTCTACACGCACCATTTTGATCGAAGAGGTCCATGATGGAGCACATCAGAACGCCAAAGGTGGAGAATGTCCGCCTGATTGACCGTACGGCCCCTAGGAAAGCCATGGTGGGGACGCTGTACCTCTCCGCCACACACACCATCTTCGTGGAGAACAACccagagacacgcagagagactTGGGTGCTCCACAGCATGGTGGCCAGTGTGGAGCGGCCGCCCACCACCCCTTCAGGAAGCCACCTGGTCGTCCACACTAAGAACTTCCAGGTGGTTCAGCTGCTCATCCCCCAGGAGAGGGACGCCATGGATGTCCAGGCCTCGCTTGCACGCCTCTCTCGCCCAGAGAAATATAGCGAGCTCTACTGCTTGTCCATCAATCCCAACGCTaacaaggaggagagggaggagtccTGGAGTTTCCTAGACCTGCAGGCTGACTACAGACGCATGGGCGTGCCCAACAACCTCTGGGTCAGCACGCCAGCCAACAGCGAGTACAGGGTGTGTGATACGTACCCATCAGAGCTGTTTGTGCCAAAGTCGGCCACACCTCCAGTCATCGTGGGGAGCTCTAAGTTCCGGAGCCGAGGGCGTTTACCTGTCCTGACGTACTTCCACCAGGATACCCTAGCTGCTATCTGCCGCTGTAGTCAGCCCCTGTCCGGCTTCAGCGCTCGCTCCCAGGAGGATGAACAAATGCTGGAGGCCATCATGAAGTCCAACCCGGGCAGCGACTACATCTACGTGGTGGACACCAGGCcaaagTTGAATGCGATGGCCAACCGGGCGGCTGGAAAAGGCTATGAGAACGAGGACCACTACGCCAACATCAAACTGCAGTTCATCGGCATCGAGAACATCCACGTGATGAGGAACAGCCAGCAGAAGATCATTGACGTGGGTGAGCTCAAGACTCCCTCCATGGGCGACTTCCTGTGGGGGCTGGAGAGCTCCGGTTGGCTGAAGCACATCAAAGCCGTGCTGGACGCAGGCGTCTTCATCGCCAAGGCGGTTGCGGAGGAGGGTATCAGTGTGGTGGTCCACTGTTCGGACGGTTGGGACAGGACGGCCCAGGCCTgctctgtagccagtgttctccTGGAGCCTTACTACAGGACTATGAAGGGACTCATGCTGCTAATCGAGAGGGACTGGGTGTCGTTCGGTCACAAGTTTTCACACAGGTACAACCATCTGGAAGGTGATCCTAAGGAGGTGTCCCCGGTGATAGACCAGTTCCTGGAGTGTGTGtggcagctgtcagagcagttcccCTGTGCTTTTGAGTTCAACGAGCGCTTCCTGGTTCAGCTGCACAGACACGTCTACTCCTGCCAGTACGGCAACTTCCTGGGCAACAgccagaaggagaggagggacatgGGGTTGCGTGAGAGGACTCACTCCCTGTGGCCCCAGCTGTGGAAGGACAGGGCACAGTACGCCAACCCCTTGTACAGGGCTGACCACACCCAGACTCAGGGGATGCTACGGCCAAACACCACCCCTTACTGCTTCAAGATGTGGAAGGGCATGTATAACCGTGTGGAGAAGAGCTCTCCTCCGCGCCAGACGCCCACCGACTTACTGACAGCCGTCAGGGAGGAGACTCAGCAGCTGGAGGAGGAGCTGACCAATCACCAGGAGGTAGCACCGGGAGGGACGGCCCAACCGGGCACCAAACAAGAGGATTGCAGCCCTGACAAAAGTGGATCAAACTAAGGGTAATGCGGGTCAGAGGAAGATCAACAAAGTGTGTGAGGAAGAATGCAGGCCAGGTGGGCTGGCTCATCCCACTGGAGATGGCCCCTTCACTAGCCCCCCTCAGGGCTATTCTCCCTCCCAGGGGGGGCCCCCGGGCTCGGCTATGACCCTGCCCTTGGGGCCCCC

Function

GO: NA

KEGG:

id description
K18083 MTMR6_7_8; myotubularin-related protein 6/7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1049994 lncRNA downstream 26071 72623644 ~ 72624115 (-) True G923228
TU1049980 lncRNA downstream 64967 72583742 ~ 72585219 (-) True G923214
TU1049662 lncRNA downstream 170259 72479621 ~ 72479927 (-) True G922946
TU1049652 lncRNA downstream 178205 72471146 ~ 72471981 (-) True G922940
TU1049649 lncRNA downstream 183391 72466504 ~ 72466795 (-) True G922937
TU1050034 lncRNA upstream 35383 72697018 ~ 72698196 (-) True G923261
TU1050035 lncRNA upstream 40124 72701759 ~ 72703712 (-) True G923262
TU1050046 lncRNA upstream 55974 72717609 ~ 72718442 (-) True G923272
TU1050079 lncRNA upstream 98847 72760482 ~ 72761261 (-) True G923297
TU1050130 lncRNA upstream 205951 72867586 ~ 72868626 (-) True G923320
XM_021619745.2 mRNA downstream 71501 72574190 ~ 72578685 (-) True LOC110534795
XM_036933869.1 mRNA downstream 298597 72004823 ~ 72351589 (-) False LOC110534569
XM_036989383.1 mRNA downstream 865856 71780585 ~ 71784330 (-) True LOC118966648
XM_036989382.1 mRNA downstream 884681 71761419 ~ 71765505 (-) False LOC110514144
XR_002475140.2 mRNA downstream 889161 71759605 ~ 71761025 (-) True LOC110534519
XM_021619719.2 mRNA upstream 85334 72746969 ~ 72755067 (-) True LOC110534773
XM_036933887.1 mRNA upstream 102775 72764410 ~ 72770434 (-) True LOC110534766
XM_036933885.1 mRNA upstream 108938 72770573 ~ 72779896 (-) False LOC110534754
XM_036933886.1 mRNA upstream 108938 72770573 ~ 72779904 (-) True LOC110534754
XM_036933892.1 mRNA upstream 120096 72781731 ~ 72790725 (-) False LOC110534749
TU1049088 other downstream 886266 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 902302 71745815 ~ 71747884 (-) False LOC110534950
TU1049024 other downstream 987052 71661775 ~ 71663134 (-) True LOC118936746
TU1048993 other downstream 1053041 71595490 ~ 71597145 (-) True LOC118936934
TU1048387 other downstream 1568674 71080906 ~ 71081512 (-) True LOC110533203
TU1049956 other upstream 243942 72905577 ~ 72906292 (-) False G923192
TU1049957 other upstream 243942 72905577 ~ 72925734 (-) False G923192
TU1051061 other upstream 968507 73630142 ~ 73631970 (-) True G924041
TU1052402 other upstream 2255542 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 2276270 74937905 ~ 74938357 (-) True LOC118966654

Expression Profile