RNA id: XM_036933892.1


Basic Information

Item Value
RNA id XM_036933892.1
length 5815
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110534749
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 72781731 ~ 72791068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATAGTTATACCTATATGCTAATTGTCTATAGGAAGTGGGGATAGATATACAATAGCTAGCTATGtctcctagctagctagcagtcgCCTATTTATGAAAGTCCGAGAGCGCTATTATTCATGACGTCGCCTGATCCTTCAGCGCTACAGTAGGCCTATTGCTGTGCTCCTAATGTTTGAGAAACTTCCCAGTTGTCGAGCAAATCCTCAATGAACAAGAGGCCAATGGTCTTTGGCTAGAAGGTGATCCTACTGTGGAAGACGAAGGTCCACCCTCACTGGTACCAGAAGGAGAAGAGCCAGCACAGCCTCTTAGTCAGACAACAGACATGGCTGTCTTttggaagggggtggagacatgGCCTGCACCACCGGTCATCAAACAGGAGGAAATGGATGACGACGACATGGAGTCTCAAGCGTACGACAAGTGGATTCCAGTGACACACTGGGCCAATCAGAATATCACAGGAGAAAGTGACGAGCAAGAGAGAAGTCAATCATCTGGGGGATCCAAAGAACTTGGACTTGACGACTTCAAGACGGAACCGAGTCCGTTGCTGGTGTCAGCTGAGGATGCTGCTCCACCCATAAAGAAGAAATATGATAAAAGGTACACCTGTGAAATATGTGGAAAGACTGAGAACAAGAAAGCCAGAATGACGAGTCACATGCGAAAGCACACAGGGTTGCCCTTTAACTGCGATATCTGTGGCGAGAAATTCCAGTGTCAGAAATTATTGACCAGACACAAGCGCTTCAATCACTACACAGGGATCATCTACAGTTGCTCTGTGTGCGGAAAAACGTTCATGCAGGTCACATCTCGCGACACACATGAGCGTGGTCACACTGGAAAAAACTATTGGTGCTCAGACTGTGGCGAGACATTCAAGGAGCGCCAGGAACGCGACACACATGAGTGCATTGTTTACAAGGGAGACCGGCCCTTCAGCTGCTCCGAGTGCAACAAGGACTTTGAAAGGCAGTACCATCTCAAAAAACACCAGCTAGAAAAACACTCTCTAATGGTGGAGCAGACTGTCGAACCAGAACCTGAGTCCAAGGACATTGAGGACCAACAGAGTCAGTTTGAATCTGAGAGTTCTGAGGCACCCACACATTTCACCTGTGACATATGTGGAATGACTATTATGAATAAAGGCAACATCAACAGACACATGTTAACACACACAAAGAAGCCCTTTAGTTGCGATATCTGTGGTGAGAATTTTAAGCGCAAAGCCCAATTCACCCGACATCAGGGCAAACACGCGAAAGTTGAGGAGAAAGTAGAAAAACCCTACAGTTGCACTGTGTGCGGAATGATGTTTGTGTATTCTAAAATGCGCAACAACCATGAGCGCAAACATATTGGAGAAGACTATTGTTGTTCAGACTGTGGCAAGAAGTTCAAGGAGCGTCAGGAGCACGAGTGCATTGTTTACAAAGGAGACCAGCCCGTCAGATGCTCCGAGTGCAATGAGGACTTTGAAAGGCAGTACCATCTCAAACAACACCAGCTGGAAAAACACCCTCTATTAGTGGACCAGACAGTCGACCCAGAACCTGAGTCCAAGGACATTGAGGACCAACAGAGTCAGTTGTTTGAGTTAGCGGAGAGTTCTGAGACTGAGGCACCCACGCGTTTCACCTGTGACATATGTGGTATGATTATTATGAATAAAGGCAACATTAACAGACACAAGTTAATACACACAAAGAAGCCCTTTAGTTGTGATGTCTGTGGTGAGAATTTTAAGAGCCACACCTGTTTAGCCAAACATCAAGGAAAACACAAGAGTGTTGAGGAGAAAATAGAACCATACAGTTGCTCTATGTGTGGAATGAGGTTTGTATTTCCTAAAATGCGTGACAACCATGAATGCAAACACATTGGAGAAGACTTCTGGTGCTCAGGATGTGACAAGACGTTCAAGGAGCGAGGGGATCGCGATGAGCACAAGTGCACTGTTTACAAGCGAGACCGACCCTTCAGATGCTCAGAGTGCAATGAGGACTTTGAAAGGCAGTACCATCTCAAAAGACACCGGCTGGAAAAACACCCTCTAATGTTGGACCAGACACGTCCCGGTCATGATACTGCGACGGTAGTACAGGGAGCACAGCCTTCAAATGACAATGACCCTAAGGCCGATATGAGTACGTTAGGTGGAAAAGTTCCAGTAACAAACTCAGGTTAAGTTGACACAAGTGAAATGGCTTCAACTGAATTAAGTTGTTTTGTTCAGTACAAAAAGGATAGACATGGATTTGAACGAAGGGGTGACGGATAGCGTTGGAAATAGTGTGTAGAACAGTGATGGGACTGGGATTCAACCCCACACAGGCAGGATATCGCATCTCTGACCTTTACTGCACAACTAACTTCAGGCACctggataatgttttacagccaTCTTTAATGCTCATGTTGGGCCTAGATTCGATCTGGACTGTTACAGCGTGCTTCACGTTTCAAATTACATTTCCGATTGATCCAAAATATGCAGCATTTAACGTGAATAGACTGATTCCCAAACCACCCCCTCACCCCTACCAACTCACTCGGAGGGCCCTCCGTTGTCACGTGTTGTTGTCAACTCCCGAGGGTGACTTCCAAAGAGAGGCGAGGGGATCAATAAACTGTCTACTTCAGGACACACTTGTGGGTATACTGATGATTTGTCTGGACTTGTGGTTtgtttacatagcaggttaggagaactaacgcagccggttaggataattaacgtagtaggttaagaaaagggttagagttaggcttaactaaaatgctacagttgtcaaCAAATAGATGGAGCTGTAGGTCTACTCCGTCTAGCCACAACCATCAGCTAtgtcaggggttcccaaacccagacccccccccccccccccccttccaacaTTGTGGAACATCCTGTGCCCCACTTCTATTTTCTAAGTATATTTCTCTGTTCACACTTCCCTTGATGGCGGGGAgaattttgcaggtttaaagctcATTTTTCGTATTCTATACATTTAGCCAAATGAGTGTGTTAATGCGAtatgagtgactcaaacattacaacaatcTATGGCCTGAAAACGTCTTGACAGAAAGGGTTGTATTAGAGTTGTTAATAAAAATGGAATTGAGAAATATTTGTGACTGTGGTTTCAGTAAcagcatttattttttaaaggttTGTCAACTCGATATGTTCTTGTTTATTGAGAGGAATAAAAGTGTAAAAACCTGTATCGTTTGGTTTTATTTAGCAAATCGAGGAGGCAGATAAACGAGTGTTTATGGTATATCACCGGTGCAACCTCGTCAGTTGTCCGGAACCAAACGTCTATCAGCAATTCAAACACTCCAACAGTAACTTAACACTGCAAACTTCGCGTGGTTAGTGAGTTTTGTAGCCATGTCTTTCGAACTCGCTTTTGGTTCTCGTGTTGCCTCCATTATGGAAGCTTTGACAGAAAAAGCCGTGCAAGACATCTGCCAACTTATGGGAGAAACGTATGCTGCTCTTCGAGTGGAAATGTTGCAAGAACAAAATCAAAGTTCGATAAAGTTACAGGCGATTGCAAATAACATCGAGAAGGAGAAGCCAGCGAACTGCATGGAGATAATTCAAAAACCAGCTTCCCCAACAGGTTTGAGAGACTTCCCAGTCGTGGAGCAAATCCTCAATGAACAAGAGGCCAATGGTCTTTGGCTAGAAGGTCACCTTACTGTTGAAGACCAAGGTCCACTGTCACTGGTACCAGAGGAAGAACAGCCATCACAGGCTTTTGGTCAGATGACAGACATGggggtggagacatgGCCTGCACCACCTGTCATAAAACAGGAGGAAATGGACGATGACGACATGGAGTCTCAAGGTTATGGCAAGGATATTCCAGACACTCACAAGGCCAACCAGAATATCACAGGAGAAAATGATGAGGAAGAGAGAAGTCAAGCCTCTGGGGGATCCAGAGAACTTGGACTCGATGACTTCAAGAGAGAACAGATTCCATTGCTGGTGTCAGCTGAGGATGCTCCAGCACCCACGAAGAAGAAATGTAATAAAAGGTACAGCTGTGAAATATGTGGAAAGACCGAGAGAAAAAAACACAGAATGACAAGtcacatgataacacacacaggGCTGCCCTTTAGCTGTGATATCTGTGGTGAGAAATTCAAGTTTCAGAATTACTTGAACAGACACCAGCGatccaaacacacagtgaaaaccTACAGTTGCTCTGTGTGCGAAAAAACCTTCCGGCAGGCCACATCTCGCGACAGGCATGAGCGTGGTCACGCTGGAAAAAACTATTGGTGCTCCAACTGTGGTGAGATGTTCAGGGAGCGCGGGGATCGTGACGCGCACAAGTGCATTGATTACAAAGGAGAACGTCCCTTCAGCTGTTCCGAGTGCAGTGAAGCCTTTCAAAGGCAGTACCATCTCAAAAGACACCAGCTGGAAAAACACTCTGTGGAGCAGACTGTCGACCCAGAAAATAGAGTTGAGGAGAAAAGTGAAAAACCCTGCAGTTGCTGTGTGTGTGGAATGATGTTTGTATATCCTAAATCGCGGGACACCCATGAACGTAAACACATTGGAGAAGACTACTGGTGCTCAGGATGTGGCAAGACGTTCAAAGAACGCCAGGGTCGCGATACGCACAAGTGCACTGTTTACAAGGGAGACCGGCCCTTCAGATGCTCCGAGTGCAATGAGGACTTTGAAAGACAGTACCTTCTCAAAAGACACCAGCTCGAAAAACACCCTCTAATGGTGGACCAGCCACATCCCAGTCATGATACATTGTTTTgtatggtttaaaaaaaataatgaccATGCCCAGACCTAACTGCTCACACCCCCCTCAGCCCCTGCCTCAAACTCCACCGTTTTTTCTGTCTCCATTGTTCAACATttatttacattgtaatacttctgacagcacACTTTCTAACTCTGCCTGTAACCTTTGGATTTTATAGCATTCCCAGAAGGTATGGATTGTCAATTTTAAATattattcattactacatttagctaacattagatagttattCTAGAGATTCTTACCCTTGCCTTGATTCGGCATTCCAGATCATCATGGTATTTGTAGTTTATGATCCACATTAGCaactaattagcatttcatttagaggggggggggggggggtgtgttgtgTGAAATTGCACCAATTCAATAACTCTGTGCCTTGTGATTTCACTTTGCTCTGAAGCTGCCAGTGTTGCTGTAATGGAGGATCTAATTAATTAGCAGGTTAGAAAgactaatgtagcaggttaggagaatgaggTTAAGAAAAGGGATAGTTAGGTTTAGCTTATCCATCTAGCCACAACCATCAGCTTTGCAAATAAACCATAAGTCCCGGCAAACCATCCAGAGGAGTCTGacgggaggatggctcataatagaATGTAATTTGCtactattccactccagccattaccacaagcccatcctccacaattaaggtgccaccaaccaccTGTATAACACCGGTCTTAATTGATTTTAGGGTGTATTGTGTTACCTGAAATTGTGTGTTGTTTTGAATATTGATTTGCTTTAGCAACATTGGATTTTCCCTTTTCATGTATATAaactttttttaattttttaaaatctggACAGCAAGGATTGTGGAAGAACAGTTGATCAAAAGGAAGGAAATTATATTTTTCTTGACTCATCAGGGGTTTCAGtaacagtattttttttaaaggtttgtCAACCCAATATGTTGCTTTCTGAGAGGAATAAAGATTTTTTTCAACCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1050079 lncRNA downstream 20470 72760482 ~ 72761261 (-) True G923297
TU1050046 lncRNA downstream 63289 72717609 ~ 72718442 (-) True G923272
TU1050035 lncRNA downstream 78019 72701759 ~ 72703712 (-) True G923262
TU1050034 lncRNA downstream 83535 72697018 ~ 72698196 (-) True G923261
TU1049994 lncRNA downstream 157616 72623644 ~ 72624115 (-) True G923228
TU1050130 lncRNA upstream 76861 72867586 ~ 72868626 (-) True G923320
TU1050140 lncRNA upstream 93896 72884621 ~ 72885147 (-) True G923326
TU1049967 lncRNA upstream 119059 72909784 ~ 72915023 (-) True LOC110497284
TU1049941 lncRNA upstream 124874 72915599 ~ 72922200 (-) True G923185
TU1049955 lncRNA upstream 134735 72925460 ~ 72928468 (-) True G923192
XM_036933886.1 mRNA downstream 1827 72770573 ~ 72779904 (-) True LOC110534754
XM_036933885.1 mRNA downstream 1835 72770573 ~ 72779896 (-) False LOC110534754
XM_036933887.1 mRNA downstream 11297 72764410 ~ 72770434 (-) True LOC110534766
XM_021619719.2 mRNA downstream 26664 72746969 ~ 72755067 (-) True LOC110534773
XM_036933877.1 mRNA downstream 120093 72648336 ~ 72661638 (-) False LOC110497295
XM_036933894.1 mRNA upstream 1885 72792610 ~ 72803322 (-) False LOC110534744
XM_036933895.1 mRNA upstream 1885 72792610 ~ 72803322 (-) False LOC110534744
XM_036933896.1 mRNA upstream 1885 72792610 ~ 72803322 (-) False LOC110534744
XM_036933897.1 mRNA upstream 1885 72792610 ~ 72803322 (-) False LOC110534744
XM_036933898.1 mRNA upstream 1885 72792610 ~ 72803322 (-) True LOC110534744
TU1049088 other downstream 1017811 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 1033847 71745815 ~ 71747884 (-) False LOC110534950
TU1049024 other downstream 1118597 71661775 ~ 71663134 (-) True LOC118936746
TU1048993 other downstream 1184586 71595490 ~ 71597145 (-) True LOC118936934
TU1048387 other downstream 1700219 71080906 ~ 71081512 (-) True LOC110533203
TU1049956 other upstream 114852 72905577 ~ 72906292 (-) False G923192
TU1049957 other upstream 114852 72905577 ~ 72925734 (-) False G923192
TU1051061 other upstream 839417 73630142 ~ 73631970 (-) True G924041
TU1052402 other upstream 2126452 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 2147180 74937905 ~ 74938357 (-) True LOC118966654

Expression Profile