RNA id: XM_036933926.1


Basic Information

Item Value
RNA id XM_036933926.1
length 2134
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110534772
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73141140 ~ 73147819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaagagggggtcagtcttatggctgggtATGGATCTAAGGACCCTAAAACAGGCAGGACAGGAACAGCTTTTAGAGTTTAAGGTGGCAGTGACGAAAAGAGCAACAGGTCATTTATCTGTTTACACAATGGAGATGTCCATACTATTGGCTGCAGAGTGGGCGGAGGAGATGTTGAATCCTGGGGCAGTAGAGCACAGCATGGGTTGGAAACTCTTCTACTGTGTTTTTACATTGATGGTTGGCCTTCTTGAATGCCCCTCGATTGGTAATGGTATCATTATCAAAACTGTGAATTTGAAGGACTCTGTCACTCTCCCTTGCAATGCAAACTGTGACATTGGCATCGTTTGGAGGATTGTGGATGGCCAGGTCGTTGCCAAGACTGATCAAGGAAAATTAATTGAAGGAAAGCGCTTTGAGAAGAGGGTGGAAATCAACAAAGACCTCTCTCTCACAATCAGCTCTGCGGTGTACAATGACAAGGGCTCATATGAGTGTATCTGTGATAATCAGATTGTTGCAGATGTGAAGCTAGATGTTCTGGTCCCGACAGAAATATCAGCTCACGTCGGAGATAATGTCACACTTCACTGCTATGGCTCAACCAGTAAGCAGGCAACCGATGGTGAGATTTATGTCCAGTGGGAGAAACATGGACAGACTGTGCTGAAGATTGACCCGACCAATACTACCTTTGGCCCTGGATTCATTGACAGGACATCAGTGACCAGGGATGGTTACGGAGAGGGTGACCTGTCCCTCACCTTCACCGGTGTACGCTCGTCTGACCAGGGGACCTACCTGTGCTTCTTCAACCGGGATAGTGACCCAGGATATCCACATGGAGTCACTCTCACTGTTAAAGaAAAGCAATTGGAGCCTGCAATGACTGATAGTGAaaggagtagggtgccattgATAGTAATAATTATTCTACTTCTGTTTATCATTTGTGTGCTCGGGTTAATGGTGATTCCCAAGAGAAACAGGAGACAGCCAACAGTGGACTTCACAGTCACTGGAAAAGAGGACAACACAGCATCACCAGCACATCTCTCCATCGAGGATCTTCCTGTTTCAGTTCAGGACAGCCAACCGTTGCCAGAGGTCCGAAGAATCCAGAGTTGTTCTGATGATCATCTTGATGAGACCACGTGTCCTGAGGGGATGGATGAAcacacagaggaagaggaggagctccATCTCTCAGTAGCTGAAAGTGGGACACTGCTAGACCAGGAGAAGAGTAGCACAGGGAGTTGAGTTATGTATGAAGGTAGTATGTTCTGGTTGCCAACTTCTTTGTTGTCGTGAAATGTTGGATGAAATGTGCTATGTTCACTGAAGTGGATGTGGATGTCTTCCTATCATAGTTTACTGTATGAATCGGTAGCCAATGACTGTAGCTTGATGGGCTTGAATCAAATGATACAGGGTTTATTTTATCTAGGGCCCAGTCTTTGCTGATGTCCTGTCTAGTCTTCCAGCCTCACTGGTGGCTTAAATTGTTTAAAGCTAGAGATTTTACACCAGCATAAGCATTTTATTGgggggtgagaggtataaaggaGGATCCTTTGAGTGTGTGGATAGGAAAGGGAAGCAGGTAGGGTATAAAGGAGGATCCTTTGAGTGTGTGGATATGAAAGGGAGCTGGTAGGGTCTAAAGGAGGAATCATTCATCTCTCTGGTGGTGGTGCTACTGATATTGTAACTGGAAGGTTTACTAGTCAAGATCAATGTCACATTTAATCTGGCCTTGCTTGATATCAAAGGGGATATCACAGTACGTGTAATACACAATATCCTCACAAGAGGGCAGACGTACACCATCATTTTAAAGTAAACTATGATTATTTTTGGGTCAGTGATAcacttgggacgtccctaccctaaaTCCTAACCTTAATCCACAAGCAATACTTTAATCCTTACATTAACTATTTTATATTTCAACTTCTGTGGGGTAGGCACGTCCCAAGGATCCTCGATAACAGATTCATGTATTATTATAACCTATTACATGATGCGTAATAAATATATGTATTTGCTAAATGATTATAAAGAATGTTTGCTATATTTACGTTTATTTTATCAAATGTAAGAAATATTATTGTTCACAAAGTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1050336 lncRNA downstream 40214 73099944 ~ 73100926 (-) False LOC110533210
TU1050340 lncRNA downstream 40214 73100505 ~ 73100926 (-) True LOC110533210
TU1050343 lncRNA downstream 40725 73099944 ~ 73100415 (-) False LOC110533210
TU1050188 lncRNA downstream 47508 73093250 ~ 73093632 (-) True G923370
TU1050187 lncRNA downstream 49467 73091418 ~ 73091673 (-) True trnae-cuc-157
TU1050372 lncRNA upstream 2760 73150579 ~ 73150805 (-) True G923509
TU1050378 lncRNA upstream 22575 73170394 ~ 73171714 (-) False G923514
TU1050379 lncRNA upstream 22884 73170703 ~ 73171714 (-) True G923514
TU1050382 lncRNA upstream 27882 73175701 ~ 73176299 (-) True G923516
TU1050383 lncRNA upstream 29637 73177456 ~ 73177686 (-) True G923517
XM_036933924.1 mRNA downstream 5564 73099933 ~ 73135576 (-) False LOC110533210
XM_036933925.1 mRNA downstream 6393 73099933 ~ 73134747 (-) False LOC110533210
trnae-cuc-164 mRNA downstream 46074 73094995 ~ 73095066 (-) True trnae-cuc-164
trnae-cuc-163 mRNA downstream 47297 73093772 ~ 73093843 (-) True trnae-cuc-163
trnae-cuc-162 mRNA downstream 47478 73093591 ~ 73093662 (-) True trnae-cuc-162
XM_036933930.1 mRNA upstream 7294 73155113 ~ 73192054 (-) False LOC110534743
XM_036933929.1 mRNA upstream 7294 73155113 ~ 73309871 (-) True LOC110534743
LOC110534807 mRNA upstream 172951 73320770 ~ 73348165 (-) True LOC110534807
XR_005034227.1 mRNA upstream 198116 73345935 ~ 73347899 (-) True LOC110533212
XM_036933932.1 mRNA upstream 213364 73361183 ~ 73362500 (-) False LOC118936751
TU1049957 other downstream 215406 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 234848 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 1377220 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 1393256 71745815 ~ 71747884 (-) False LOC110534950
TU1049024 other downstream 1478006 71661775 ~ 71663134 (-) True LOC118936746
TU1051061 other upstream 482323 73630142 ~ 73631970 (-) True G924041
TU1052402 other upstream 1769358 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 1790086 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 1905297 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 2136172 75283991 ~ 75284673 (-) True G925211

Expression Profile