RNA id: XR_005034227.1



Basic Information


Item Value
RNA id XR_005034227.1
length 1141
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110533212
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73345935 ~ 73347899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTGGAGTTGCTGCAGTGTttctggggctgctgtgtgttctcctactggctgggatcataggcctgtctgtctactATAACAGAGCCATTAAAGATTCTGAGGATAAAAGGAACATCTTGTCCCAGAGTTTCTCCCTTTATAAAATCAACACAACttcagagagagaccagctacagaccagatacaacaacctgactgaagaGAAAGGCCATATTCAAGCCAAGCTTTTTGTGATAGAGCAGCATTGTCAGGAGGGATGGAGATACTCTGACTCCAGTTTGTACTTCCTGTCTACTGAGAAGAAAACCTGGGAGGAGAGCAGACAGGACTGTCTGGGgagaggagcagacctggtgatcataaacagcagagaggaacagACATTTGTCTTCAACCTCCACCTGAGTGcctggattggtctgactgactctgttactgaGGGGATCTGGAAGTGGGTGGATGGCACAACACTGACCACAGGGTACTGGTGGAAAGGACAGCCTGATAATTATGGGCAGGAGGACTGTGCTGAGATAAACTTTAGTAAAGGTGACCCTGTAACAACATGGAATGATGACAAATGTGGCGCAAATAACAGCTGGATCTGTGAGAAAGTGGTGTAACAAtccctctcgctctatctctctctcatatacagtgtatatatattgattgttggATACAGtgctgaatggttaagtgatgattCCACCTGGTGGTTAAAGTGAGGGATGAACTCACCAAAAAGTTGTATTACAGAGTTGCCTACGGGCTCTTTTTTAATGAGACCTTACTCAATTCctcctcacaccctctctcttcgACTCCTTCTCCAAACACATTAGAGAATACAATCCTAGGGGAGGGACCTTGGACCTTCTCCTCTAATAGGgttgagaaggaggggaggagataggaggagaagagacaagaggagaggaatcTAGGCTAATTGAGATAGAGCcttagtgtcagagagagaggaggaagaagaacattaagagaatgaggaagagaaaAAGTGATTGTTGTGTTTAGATTTAGAGGAGaatatgtagacatactgtactCTGTAAAATGCTTCTTCCTTATTTGTATTAGAAACATGTCATGTGATTTGCAGTAGGCTTATGcttagta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1050931 lncRNA downstream 10846 73334110 ~ 73335089 (-) True G923948
TU1050445 lncRNA downstream 51954 73293736 ~ 73293981 (-) True G923570
TU1050439 lncRNA downstream 68344 73274217 ~ 73277591 (-) True G923564
TU1050430 lncRNA downstream 78834 73266884 ~ 73267101 (-) True G923559
TU1050426 lncRNA downstream 84231 73261140 ~ 73261704 (-) True G923555
TU1050919 lncRNA upstream 13052 73360951 ~ 73363500 (-) True LOC118936751
TU1050958 lncRNA upstream 41314 73389213 ~ 73389529 (-) True G923970
TU1050960 lncRNA upstream 43434 73391333 ~ 73400251 (-) True G923972
TU1050978 lncRNA upstream 57518 73405417 ~ 73667929 (-) True G923977
TU1050985 lncRNA upstream 64463 73412362 ~ 73412838 (-) True G923979
XM_036933929.1 mRNA downstream 36064 73155113 ~ 73309871 (-) True LOC110534743
XM_036933930.1 mRNA downstream 153881 73155113 ~ 73192054 (-) False LOC110534743
XM_036933926.1 mRNA downstream 198116 73141140 ~ 73147819 (-) True LOC110534772
XM_036933928.1 mRNA downstream 198264 73141140 ~ 73147671 (-) False LOC110534772
XM_036933927.1 mRNA downstream 199512 73141140 ~ 73146423 (-) False LOC110534772
XM_036933932.1 mRNA upstream 13284 73361183 ~ 73362500 (-) False LOC118936751
XM_036933931.1 mRNA upstream 22405 73370304 ~ 73373578 (-) True LOC110534783
XM_036933942.1 mRNA upstream 96054 73443953 ~ 73446889 (-) True LOC110534778
XM_036933956.1 mRNA upstream 105546 73453445 ~ 73456726 (-) True LOC110534518
XM_036933952.1 mRNA upstream 115589 73463488 ~ 73466195 (-) False LOC118936758
TU1049957 other downstream 420201 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 439643 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 1582015 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 1598051 71745815 ~ 71747884 (-) False LOC110534950
TU1049024 other downstream 1682801 71661775 ~ 71663134 (-) True LOC118936746
TU1051061 other upstream 282243 73630142 ~ 73631970 (-) True G924041
TU1052402 other upstream 1569278 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 1590006 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 1705217 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 1936092 75283991 ~ 75284673 (-) True G925211

Expression Profile