RNA id: XM_036933942.1



Basic Information


Item Value
RNA id XM_036933942.1
length 1215
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110534778
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73443953 ~ 73446889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACAGACGCAGAACAGCACAGGGAGACAACACAGCTAGATGCACATTAGAGTTGAGGTAAGAAGTAGAAGTTACTGTATTTGACCACAAGTGTGTTAAGATGTCAAAGGGAGTCTATGAAATCCCAGATGGATTTAATGACGATGAGCCTGATGCTATGAAGAACACAGACATCGATGGCCAATTATATTCCAATGTAGGAGCCTTCAAGCCTAGTCCAAGAGATGGAATTGTTGCTTCAGAACCTGATAGCTCAGTGAAGAGACTCTTCCTAGTTGCTGCAGTGTttctggggctgctgtgtgttctactggctgggataacaggcctgtctgtctactATAACAGAGCCATCAAAGATTCTGAGGATAAAAGGAACAACTTGTCACAGAGTTGTTCCCTTTATAAGACTAACGcaactgcagagagagaccagctacagaccagatacaacaacctgactgaagagagagaccagctacagaccagatacaacaacctgactgaagagagagaccagctacagaccagatacaacaacctgactgaagaGAAAGGCCATATTCAGCTAAAGCTTTTTGTGATAGAGCAGCATTGTCAGGAGGGATGGAGATACTTTGACTCCAGTTTGTACTTCCTGTCTACTGAGAAGAAAACCTGGGAGGAGAGCAGACAGgactgtcaggggagaggagcagacctggtgatcataaacagcagagaggaacagACATTTCTCTTCAACCTCCACCTGAGAGcctggattggtctgactgactctgttactgaGGGGATCTGGAAGTGGGTGGACGGCACCCCACTGACCACAGGGTACTGGGGGAAAGGACAGCCTGATGATTATGGGGAAGAGGACTGTGTTGAGATATACTATGGACAAGATGACCCTGTAAAGACATGGAATGATGAAAATTGTCACAAATATCATGACTGGATATGTGAGAAAGTGGTATAACAATAACCCACAGTaacaaacactctctctctctgtgtctctctctgtgtctctctctctcaattcaattcaagggctttattggcatgggaaacatgctaacattgccaatgcaagtgaagtagataatatacagaagtgaaataaacaataaaaatgaacagtaaacattacactcacagaggttccaaaagaataaagccatatcaaatgtcatattatgtatatacagtgttgtaacaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1050900 lncRNA downstream 3525 73345827 ~ 73440428 (-) False G923929
TU1051013 lncRNA downstream 4949 73438687 ~ 73439004 (-) True G923995
TU1050989 lncRNA downstream 28336 73415208 ~ 73415617 (-) True G923981
TU1050985 lncRNA downstream 31115 73412362 ~ 73412838 (-) True G923979
TU1050960 lncRNA downstream 43702 73391333 ~ 73400251 (-) True G923972
TU1051019 lncRNA upstream 6982 73453871 ~ 73464356 (-) True G924001
TU1050916 lncRNA upstream 16525 73463414 ~ 73466113 (-) True LOC118936758
TU1050925 lncRNA upstream 17499 73464388 ~ 73467825 (-) True G923944
TU1051021 lncRNA upstream 20424 73467313 ~ 73467641 (-) True G924003
TU1051033 lncRNA upstream 59214 73506103 ~ 73510193 (-) True G924015
XM_036933931.1 mRNA downstream 70375 73370304 ~ 73373578 (-) True LOC110534783
XM_036933932.1 mRNA downstream 81453 73361183 ~ 73362500 (-) False LOC118936751
LOC110534807 mRNA downstream 95788 73320770 ~ 73348165 (-) True LOC110534807
XR_005034227.1 mRNA downstream 96054 73345935 ~ 73347899 (-) True LOC110533212
XM_036933929.1 mRNA downstream 134082 73155113 ~ 73309871 (-) True LOC110534743
XM_036933956.1 mRNA upstream 6556 73453445 ~ 73456726 (-) True LOC110534518
XM_036933952.1 mRNA upstream 16599 73463488 ~ 73466195 (-) False LOC118936758
XM_036933950.1 mRNA upstream 50756 73497645 ~ 73502828 (-) False LOC118936757
XM_036933951.1 mRNA upstream 50756 73497645 ~ 73502828 (-) True LOC118936757
XM_036933954.1 mRNA upstream 75935 73522824 ~ 73524086 (-) True LOC118936759
TU1049957 other downstream 518219 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 537661 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 1680033 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 1696069 71745815 ~ 71747884 (-) False LOC110534950
TU1049024 other downstream 1780819 71661775 ~ 71663134 (-) True LOC118936746
TU1051061 other upstream 183253 73630142 ~ 73631970 (-) True G924041
TU1052402 other upstream 1470288 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 1491016 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 1606227 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 1837102 75283991 ~ 75284673 (-) True G925211

Expression Profile