RNA id: TU1050916


Basic Information

Item Value
RNA id TU1050916
length 1026
lncRNA type sense_over
GC content 0.44
exon number 4
gene id LOC118936758
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73463414 ~ 73466195 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACAAGTCAACACAgatagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactgaagagagagaccagctacagaccagttacaacaccctgactgaAGAGAGAAACCAGCTACAGACAAgtaacaacaacctgactaaagagagagaccatctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagcttaCCAATTGTAAACAAACCTGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACTGAGACTAAAACCTGGAAGGAGAGCAGACAGGACTGTTTgaagagaggagcagacctggtgatcATAAACAGTGATAtggaacagGAGTTTCTCTTCAAACTCAAGAAGAGAgtctggattggtctgactgactctgttagTGAGGGGACTTGGAAATGGGTGGACGGCACcccactgaccaacccaaggtactggaatGACCATCAGCCTGATAGTGGAGATCCTAGtggggaggaggactgtgttgagatacataaagattggATCTTTCCACTTAAGGCATGGAATGACATGCCATGTGACTGGAAACTCAACTGGATTTGTGAGAAAGTGGTTTAACATCATCCTGACAACATACTGTAGCCTGCAGTGCACACAACttcctccttcattctctctctctctcacacacacacagatagagccTCTGTCTTGATCTCGCTCACACACTCTGCCTCAATCCCAAACACACCCTTACACAGATtttcacacacacgcaagcacacatgcatacacgtacacacacacacatgcaaatgcACCTATTATTGTATTTGTTTGTAGTATCTTATTGATAAAAGTCCTACTTATTTCCTGATTGTACCTTCCTGTGTACTATTAATTTTGTTTCACACGTCATCAGATATAATTTGAAATTAGTACAGTTGACAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1050900 lncRNA downstream 22986 73345827 ~ 73440428 (-) False G923929
TU1051013 lncRNA downstream 24410 73438687 ~ 73439004 (-) True G923995
TU1050989 lncRNA downstream 47797 73415208 ~ 73415617 (-) True G923981
TU1050985 lncRNA downstream 50576 73412362 ~ 73412838 (-) True G923979
TU1050960 lncRNA downstream 63163 73391333 ~ 73400251 (-) True G923972
TU1051021 lncRNA upstream 1200 73467313 ~ 73467641 (-) True G924003
TU1051033 lncRNA upstream 39990 73506103 ~ 73510193 (-) True G924015
TU1050941 lncRNA upstream 44635 73510748 ~ 73514124 (-) True G923957
TU1050902 lncRNA upstream 59450 73525563 ~ 73537582 (-) False G923929
TU1050890 lncRNA upstream 183153 73649266 ~ 73652051 (-) False G923929
XM_036933956.1 mRNA downstream 6688 73453445 ~ 73456726 (-) True LOC110534518
XM_036933942.1 mRNA downstream 16525 73443953 ~ 73446889 (-) True LOC110534778
XM_036933931.1 mRNA downstream 89836 73370304 ~ 73373578 (-) True LOC110534783
XM_036933932.1 mRNA downstream 100914 73361183 ~ 73362500 (-) False LOC118936751
LOC110534807 mRNA downstream 115249 73320770 ~ 73348165 (-) True LOC110534807
XM_036933950.1 mRNA upstream 31532 73497645 ~ 73502828 (-) False LOC118936757
XM_036933951.1 mRNA upstream 31532 73497645 ~ 73502828 (-) True LOC118936757
XM_036933954.1 mRNA upstream 56711 73522824 ~ 73524086 (-) True LOC118936759
XM_036933949.1 mRNA upstream 85952 73552065 ~ 73556782 (-) True LOC118936756
XM_036989385.1 mRNA upstream 100731 73566844 ~ 73569454 (-) True LOC118966650
TU1049957 other downstream 537680 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 557122 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 1699494 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 1715530 71745815 ~ 71747884 (-) False LOC110534950
TU1049024 other downstream 1800280 71661775 ~ 71663134 (-) True LOC118936746
TU1051061 other upstream 164029 73630142 ~ 73631970 (-) True G924041
TU1052402 other upstream 1451064 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 1471792 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 1587003 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 1817878 75283991 ~ 75284673 (-) True G925211

Expression Profile