RNA id: XM_021619486.2


Basic Information

Item Value
RNA id XM_021619486.2
length 1774
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110534578
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 73956273 ~ 73965553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGACTCTAGATACCCAGCTCAACAGGCAGGCAAAGAGACCCTGATTTCTCTGGTTGGAAAGACTGTTCCTTGGAAAAGATTGGCAGCACTCCAAAACCCAAACATGACTGAACAAAATAAAGAGGTCCGGATTGTTCTGGTTGGAAAGATTGGTTCTGGGAAGAGCGCAACAGGAAACGCCATCCTGGGGAGAAAAGCGTTTGAATCCAAAATGTCCTCTATTTCTGTGACATCCTCAAGTAAAAAGAAAAGAGGAAATGTGGGAGGGCAACATGTAGCTGTCATCGACACACCAGGCTTGTTTGACACCAAGTTAACACAGGAGGAGGCACTGAAAGAGATCTCACAGTGCCTGCTATTCTCCGCTCCTGGTCCCCATGTGTTCCTGGTTGTTCTCAAGCTGGGAGGATTCACTGAAGAGCAGCAGGAAATTGTGAAGATGATCCAGACATTATTTGGTGATGAAGCATCGAAATACACCATGGTTGTCTTCACACATGGAGACCTTCTTGATGATGTAACAATTGAAGACTTCCTGCATGGAAATCCCAAACTGGAAAGTTTCATTACCAAATGTAATGGGGGATATCATGTCTTCAAAAACAAAGATCAGAATCCCTCCCAGGTCCCTGAGCTCCTTGAGAAGATAAACAAGATGGTGACGATGAATGGAGgaaaccactacaccactgagatGTTCCAGGAGGCTGAGAGAGTGATTGAAGAAGAGAAGAACAGGATCttgagagagaatgaagagaagATACACAAAGAGAGGGAAGAACTGAAGGCAACGTTTGAAGGAGTGTGTCTAAGAGAAGAAGTAGAGAAGCTGGGGATAAAACAGGAAAGAAAAGCTAGAAAGAATGCTGAGAAATTTAGCAAAATGGGAACAGGTGCTACAATCGGAGCGGCTTTGGGAACATTTGGAGGCCCAGTTGGTATGTCAGTTGGTGCAGCAGTGGGAGCTGCAGTGGGAGCTGGAGCATGCAGTACTCAATGAGAGTCCGTAGATAACAGTGCTGTACCTTCTACAAGTTGTTTGACTTCATTACTTGATATTGAAAGCTTCCTCTATATACACAGAGTCAACACAACATATGTTATTGTAGCCTACATTAAAAATGATACTCAGGGGGTTGATGAACACATATTTAGCTGTTTTTGTTATTATGTTTTACTGATCACAAGAAAAGGTTGTTGTATTGAGGTAGATTTTATTAGGAGTAACAGACACCTGCAAAAGATGGGAGGCACTCACTAATAAAGTATTACTTATATGTATTATTAACACTCACTAATAAAGTATTACTTAGATGTATTGTTAACACTCACTAATGAAGTATTACTTATATGTATTATTAACACTCACTAATGAAGTATTACTTATATGTATTATTAACACTCACTAATGAAGTATTACTTAGATGTATTATTAACACTCACAATGGACACATTTCAGCCATCAAGCATTTCCCTTTTGGACATAATGTCATTAATTACATCATCCATGTGATAATTCTGTATTGTGTTGTTCTTATGACCTCACAGAACCATGGTTCTCATAATTGAAAGAACGCCTCATTATCCACTATGCACCACAGTCAATTTATCCCCTCATGTTGCATGAACTTAAACTTGATGCATTACTGACACTTTGAAGTCAACACATAAGTGTCTAAAGGGCAGGGAGTTCTAATGCAAAGACCCATTTTCTATCAAATCATGTGACTTAGGCTTCTAAATCACACTCAAAGAGATGGCAGCATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1051195 lncRNA downstream 24087 73921734 ~ 73932186 (-) True G924151
TU1051130 lncRNA downstream 111311 73808791 ~ 73844962 (-) True G924096
TU1051147 lncRNA downstream 111877 73844111 ~ 73844396 (-) True G924113
TU1051079 lncRNA downstream 221207 73687515 ~ 73735066 (-) True G924057
TU1050903 lncRNA downstream 251296 73703272 ~ 73704977 (-) True G923929
TU1051232 lncRNA upstream 15471 73981024 ~ 73982172 (-) False G924178
TU1051233 lncRNA upstream 15471 73981024 ~ 73982172 (-) True G924178
TU1051242 lncRNA upstream 49686 74015239 ~ 74018490 (-) True G924187
TU1051262 lncRNA upstream 82602 74048155 ~ 74049223 (-) True G924204
TU1051300 lncRNA upstream 165527 74131080 ~ 74131371 (-) True G924240
XM_036933964.1 mRNA downstream 43765 73910261 ~ 73912508 (-) True LOC110497261
XM_036933938.1 mRNA downstream 142460 73790874 ~ 73813813 (-) True LOC110497275
XM_036933936.1 mRNA downstream 159298 73790874 ~ 73796975 (-) False LOC110497275
XM_036933937.1 mRNA downstream 159298 73790874 ~ 73796975 (-) False LOC110497275
XM_036933948.1 mRNA downstream 210244 73743370 ~ 73746029 (-) True LOC110497266
XM_036933965.1 mRNA upstream 23216 73988769 ~ 74009226 (-) True LOC110515220
XM_036933968.1 mRNA upstream 80930 74046483 ~ 74054724 (-) True LOC110519805
LOC118966652 mRNA upstream 92613 74058166 ~ 74061446 (-) True LOC118966652
trnal-cag-6 mRNA upstream 101164 74066717 ~ 74066799 (-) True trnal-cag-6
XM_021619480.2 mRNA upstream 102807 74068360 ~ 74078768 (-) False LOC110534571
TU1051061 other downstream 324303 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 1030539 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 1049981 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 2192353 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 2208389 71745815 ~ 71747884 (-) False LOC110534950
TU1052402 other upstream 951624 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 972352 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 1087563 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 1318438 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 1526580 75492133 ~ 75494111 (-) True LOC110511405

Expression Profile