RNA id: trnal-cag-6


Basic Information

Item Value
RNA id trnal-cag-6
length 83
RNA type mRNA
GC content 0.60
exon number 1
gene id trnal-cag-6
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74066717 ~ 74066799 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaggatggccgagcggtctaaggcgctgcgttcaggtcgcagtctcccctggaggcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1051262 lncRNA downstream 17494 74048155 ~ 74049223 (-) True G924204
TU1051242 lncRNA downstream 48227 74015239 ~ 74018490 (-) True G924187
TU1051232 lncRNA downstream 84545 73981024 ~ 73982172 (-) False G924178
TU1051233 lncRNA downstream 84545 73981024 ~ 73982172 (-) True G924178
TU1051195 lncRNA downstream 134531 73921734 ~ 73932186 (-) True G924151
TU1051300 lncRNA upstream 64281 74131080 ~ 74131371 (-) True G924240
TU1051308 lncRNA upstream 79028 74145827 ~ 74146073 (-) True G924248
TU1051523 lncRNA upstream 137873 74204672 ~ 74209934 (-) True G924442
TU1051572 lncRNA upstream 239143 74305942 ~ 74391812 (-) True G924486
TU1051580 lncRNA upstream 331848 74398647 ~ 74404518 (-) True G924490
LOC118966652 mRNA downstream 5271 74058166 ~ 74061446 (-) True LOC118966652
XM_036933968.1 mRNA downstream 11993 74046483 ~ 74054724 (-) True LOC110519805
XM_036933965.1 mRNA downstream 57491 73988769 ~ 74009226 (-) True LOC110515220
XM_021619486.2 mRNA downstream 101164 73956273 ~ 73965553 (-) True LOC110534578
XM_036933964.1 mRNA downstream 154209 73910261 ~ 73912508 (-) True LOC110497261
XM_021619480.2 mRNA upstream 1561 74068360 ~ 74078768 (-) False LOC110534571
XM_021619481.2 mRNA upstream 1561 74068360 ~ 74078768 (-) False LOC110534571
XR_002475145.2 mRNA upstream 1561 74068360 ~ 74078768 (-) True LOC110534571
XM_036933970.1 mRNA upstream 12516 74079315 ~ 74092648 (-) True LOC118936763
XM_036933972.1 mRNA upstream 26388 74093187 ~ 74108411 (-) False LOC118936764
TU1051061 other downstream 434747 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 1140983 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 1160425 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 2302797 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 2318833 71745815 ~ 71747884 (-) False LOC110534950
TU1052402 other upstream 850378 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 871106 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 986317 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 1217192 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 1425334 75492133 ~ 75494111 (-) True LOC110511405