RNA id: XM_021619481.2


Basic Information

Item Value
RNA id XM_021619481.2
length 6312
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110534571
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74068360 ~ 74078768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACGCAGGCTAAATATCTACTAGCTGTGAGCTACTAAATAGACCATGTTTCTCCTGTATTAGTAGCTTCTGGGGTTAAATTCGGCACCTCCTAGGTGCGGCCCAGAATACGTGACGAGTTTAGTGGTTCTTTGTCAAGAATACAGCGGGGAAACGGTTACTGATATTTCTGTGGCTGCACAGGATCTAAGAGCACACCTTTCAAACTGTGCAGATATGAGTGAAGTTAGGACTCAGAGTGGAACCTGAATGCTGGTGTGGAGACAGGATGAGTGACACCACTGTATCGCCTGAGGGTGCAGAGAGTGGGAAGAGTGAACATATCCGCCAATGGCTGCATAGTAGTCCCACTGCCCCACAGGAGTATAATGAGGACGTTGCAGGGTCAAGTCTTCTCTGCCCTGGTAAACAGGGCTTGGTGGCccaggaggagagagcagagtcaCCTAGCTGTCTGTCAATGAAGAGTGATCACTCAATGGGTCAGCCAATCAACTTCCACCGAGGACATGGCACAAGGGACAAAagGGAGGGAGCAGACTCACCTACGCCCAGCTATCTGTCAATGAAGAGTGACCAGTCAATGGGTCCATCTTCAAGGATGATGACATCAGACACAACACAACTGTCCATTGGTGGAGTGCATGCAACAATGCATACTGAACATCATGGCATGAACAGAGTCAGCAACCTCAGAGAATTCCCACAGAGAATCGAAGACTGGACGAAGGAGCATGTGAAAGAGTGGCTAATTAGTAGCCTCAAACTCCCTGAGGTCGCAACAAAACTTTATGAACAGGACGTGTCAGGAGCTAGCCTGGTTTGCATTGAGAAACAGGACTTGACTGATTTCGGTGTTAAGTTTGGGCCTGCGATTCAAATCATAAAAAATGTAGAGATACTGAGAAACGACTTGGAGAGTGTAGGGAGAAGCATGAGATCCCCTGAGAGTGACCCCTTCAGAAGACAGGAGAGATTTAGATTTAGAGCCATACCAGAAGCTAGGATGGGGTCACATGAGGAAACTCAGGATTCTGACAGTGTGAAATCGGAGTCGGTGGCTCCAAGTCTAAGCTCATCATGGACATCAGTGGAAGAACTGAGACATTCCGGTTCAGATGTTGCATcccccattctactgccaatggtaGAGTCGGAATACATTCCAGCTTATGGAAATATGGAGGACAATACGAGACAAAGTGAGACGTCCATCTCATCATTTGACCACTTAAGAGAAACTGCTCCAAATCTGGAGAAGAGAATATGTCCCCCACGTCCCTTTGACCAAAACGACCTATCGTTCACATACATACAAAATGATATCCTCCCCCCTGAATCCGGTCCAAGCAATCTCATTGACCCGGTACATGAGTACAAGCTCCTGCCAAGCACAGAGGAAGCCAGTGAGATAGATATTCTGGAAAAGTTCAGCAATGAAGTGTTTCGTTTTTCCGCAGCCTGCATGAACTCTCGCACCAATGGTACAATTCATTTTGGGGTGACAGGCGGGCTCGGACACATGCATGGACAGGTGATTGGGCAAAACCTGCCATCATTCAATATGTATACAGACAGGTTTGACTTGCATCTCAAGGAACACTTTGGAGAAGAAACAAATATCGCAAGATCATGCATCAGACCTCCAAAATTCTTTCAGGTTCAACGTCTAGATGGCGCGACTTCAGACAAGTGGGTGATAGAAGTTGATGTTGTCCCAAGTTATTCACAGACTCAAGAGAAGCTTTTCTATACCTCAATAATACCTGAACAAAATGGAGAAGAATACAAAACTGAATGTCTGTTTATTCGACAAGGTCCAAAGAGCATCAACATTCTTGCAGACAATAATCCCAGAAGTCTACAGGAGAAGATGAGAGGTTTGACAGAGGAAGTCAAATGTTGGTCATCAGCACGCAAGTCAAAAGAGGAGAGCAACTGTCAGCAGCCCAACCAAAACCACCAAGGTCAGAGGCTAAAACAATTGATAACTCATGGGAGAGACACACTTGAAAACTCATTGCAAGTTCTAGTTGTCACAAACAAGTGCCACCCCAGTCAACATGAACATTTGGGTTTTTTGAAAGAGATGAAGTTGTTTGCAGTGCTCGAGTTTGACCCAGAATCTGACATGAACGGGACATGCAGTTTCTACAGAACAGATCGCATAGCGAATCTTCATTACCCTCGAATGTACAATACTAATGACAATGTCTCCAGTGTTATCGGAAAGCTGAACTTGTTTAAGCAGACAAGCTGGGTCTTTTGTAATGGTCGAGCAAATGAGGTCAGTGAAGCAGACAGACCTTTCAGTACCAGTGAATGGCTGAAGAAACGTGCTGGAGAAATCAGCGATATGGTTTCATTTCTCTGCAATCCAGACGTCTTGTCGAAAGACAGATTACTTGTGGTGTTCATGCTTCACTCAGGAGTCACTGACATCTCAAGCCCTATACTTGAGGCCTTTTGTGCGATCTATCGCACTCTTGAGGGTGAGGATAATATGCTCTGCATATGCAAAGATTCCAATGTATTCAGTCAATGGAGAGACATGATAAACACTCGCTGCAAAGTGGATATTACTAGTAAATGTATCTACGAATTGAGCCTGAATGAAATCGACTGCACCATCAGGAAAATCAAAGAACCCCAGACACGGTCCTCTAGGAGATATCTGCCATCTTCTGGCTCCAGTTCAGTCCTCCTGACACAAAAAGACGAAGAGCTGATGACCGTACTTGATATACTGAGTGAAAATGAATGTGAGAACACTGAAATTGAAACCAAAGACACTTTTGAGGAATTCAAGACCAACACGGAGGAGGACTTTTACAGAGGCGGACAAGTGACTTGGTGGAACTTCTACTTGTCCGAGAGGCCAGGTTGTCTGCCATTCATCAAACGTGACAAGTATGAGGATCTTCACAACCTGATCACACCTACAGAGAGGTACACATCGCCATGCATAATAATAAACCTCTTCCATCATCCAGGATGTGGTGGAACAACACTGGCCATGCACGTGTTGTGGAACTTGAGATGTAAATTCAGATGTGCCGTTCTGAAAAACACCACAGCACAGAACAGTGAGATCGCAGTCCAAGTCACACACCTGCTGACCTGTGGCAAAGAGAAGCAGTTGAGTTATTCTCCTGTTCTACTCTTGGTGGACAACTGGGAGGACGTTGAAGACCTACAGAGATGCATACTAAGTGCAGCCAACGAGAAGAAGAAACCTGACACTCTGATGGTCATCATACTGAACTGTGAGAGATCACAGATTCCTGCAGAGAGCTCCAGAAACAGCCGACTTGACAATGTGTTCATGATCAACAAGCTCTCCACCAAAGAGCAGAGCTTCTTTGAGGTGAAACTGAAAGAGCTCAAAGGTCACCATCAAAAACCTGAAACGTTCTACGCCTTCATGATCATGACAAACAATTTCAGTGAGAAGTACATCAAGAATCTGGTGCGAAACACCCTGAAAGACCTTGACACCTCCAGAAAAGAAGGACAGCTATTTTCACTCTTAGCTTTGCTAAATACATATGTGAATGGCTCCTACATGGCCCTGTCCCTATGTGAGGATTTTGTGGGGATTAGGAATGCTCTGTGGGGAAAAGAGACACTTGAGGACAAAATTAACCCATACTCCACGCTACTGATCCGCTTCAACATTGAAGAGCACGGCACTTATCAGGCAGTTCGGTTTCTACACCAAATGATTGCAAGTAATTGCCTCAAAGTCCTCACCGGAAAGCACAAGCTTCAACTGGGGGAAATAACAACCAGTCTGTTACACTGTGACTTGCTGTACAAATCTGGCATGGGTAAGGACATCCTGGTTCAAAACATCCAAAGTATGCTGATCACGCGGCAACGAAAGGAACTTGGACATGACAAAGATACACTCTTCTCTCCTTTGATTGAAGACATACAGACGGATGAGGGAATCAGCCAAATCAAAGAAGTTCTTGTAAGAGCAACAATGAGATTTGACAAAAACGCAACTCTGCCACAAGCTTTGGCAAGGCATTTCTATCTGAAAGAGAAGGATTATATATCTGCTCTGCAATGGGCCAAGGATGCACAGCAGAAAATGTACAATTCTTACATTGCAGACACATTGGGACAGGTGTACAAAAGCCACCTGAAATATGAAATTGAACGTGCTGAGGAGCTCACTCCAGAAGGGTTAGACAAATGCCTAAAATTAGCATTTCAGGCCACCAAAGCATTCAGAGATTCACAGGAACTCGCAAAGAAGGACGAGCCAATGGATTCCCTTGATCTGCCCAACAGAAAGAGGCAACGAACCTACAACACATCTGGGTATGTCGGTGAAATGGAAGTTTCAATGATTGTTTTTGATATCATCAAAGATATTCCTTTTTTCAAAAAAAGTGATGCACTCCAGCGAGACAAAATGCTGCAGTTCCTCAAAAACCACTTGCCAGTGAGTGATTTTCATGAAACAACAAACAGTACAAATTATCAATTCATTGCTGTTCTGTCAGACCACGAGAAATTCCTGGTCTCTTTGAAGCCACGGCTGAAGGAGATGTTCAGTTTTTTTGAGAACTACTTCACATACCTGAAGCCAAGGTCAATTGAGAAGGAGACAGCAGAGGACAGAAACAAACGAAAAGTATCAGAGCTCTTCAAGAAGTACATTCACATCTTCTGTTCCTCGGGAGAAGAGAGAGCCTCCGAAAGGGCCAGTAAACCAAAACTGAGTCTCCGGCAGGAGATAGAGGAGCAGCGAAACTATTTGGAGCAAAAACGAGCAGATTCATTTGCTGGTCTTCTCCAGTATCTGAATGAGAAGAATGGGAATCAAATTGAATTAATTCTGAAGAAATTGCAGTTCATTGTTCAAAATTCTACACGGAAACTCATGGCTGATCGGATCAATTTCATCCTTGCAAACATTGTTCTTCACTGCGTTAAGCAAAGCTCAACATTGCTGAAGAGGTACGAGGAGCTGGTCTCCCTTCTCAACGAGGCACTGCAAGAAGAGGGAACCAATTCAAACTGCACAGAGCTGTACTACCTCTCAATGTTGCTGATGTGGCCAAGAAAGGACAACCTGCTTGAGAGCACCACAACGTTCAAAAACATTGGCACGTATGTCACTTCATCGAAAAAATCTTTCCATCGTCGCTTCTCCCACATGTTGCCGGCGAAGAGTTGCATCGCACATTTCTACCTCGGGAAATCAAGAGGACTGAGGAGAATAATTCACAAAGGCAGGCTTGATCAGTTGCTGTACAAAGAGGGACCCAAAACATCACACAAGAAGGCCTCATCCAAAGATAGACCCCCAAACCCGCATCAACTGTGGCAAAGTGGAGCAATATGGAGGGATCCTGAGATACAAAACCTTTTACAGCGGGTCAAAGGCAAAACGGAAAACGGTGATATTTATGTTTACTACGGGGGCAATTTGAAAATCTCAGTGCGTCCAGTATACCTTGGTGGAGTCCGGAGTGGATGCAGTACGGAGGAGGTCTCCTTTTACCTTGGATTCACCATGGAGGGACCCGTCGCTTATGACATAAAGTATGAAAATGACCGGTAAACAGCTTACCATCAGGCAGACTGAGTAAGGGATGCAAGCGTTTGCACTTAGGGAAGGCAAGGCTTCCATTGAAGTTATATAGGCCTAGAGGGTTTGACTGGGGTGAATGTCTGTGAACCAGGACAGAATCACATTAAGTAAGATACCAGTGTGCTCTTGTCACTGTGTGAGGAAACCCAACCTCAACCACCTTGATATAATcaaagcagagagaacaggtgtCGGGTGACATTCAGCAATGAATCATTCATGCTTTTAGAGGTGAAACAATGAATCATTCATGCTTTTAGAGGTGAAACAATGACAATCAATCTGGCATCAGAATGGATTGTAATGTCTCTAAGTCCCTGTAATTTTGTCTCTTAAATCCCTGTAATTTTATCTCTAAGTCCCTGTAATTTTGTTTCTAAGACCCTCTAATTGTAACATACAGTACTACACAGTAGCAGACCAATGAACAAGGATTGTAGACCTATAAACCATTTGCAACTATTCAatgcttaaaacatgttttatggTTTTGCATTGTGTTTATTGAAACTACGGAATGATTATTATGTTACAAGGCATATTGACTTTCTGCAAGTTATGTATCTTCTTCAGATGTTTGTCTAAATACATTCAATTGCGTGGTTATTTGAAAGTATATGCTGCATTATTTACAAGAGAAAAGAAATTAGGAGAAAACCTATTGTCAATGTTTGTTAATGGAATAAAGAGAAttgcatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1051262 lncRNA downstream 19137 74048155 ~ 74049223 (-) True G924204
TU1051242 lncRNA downstream 49870 74015239 ~ 74018490 (-) True G924187
TU1051232 lncRNA downstream 86188 73981024 ~ 73982172 (-) False G924178
TU1051233 lncRNA downstream 86188 73981024 ~ 73982172 (-) True G924178
TU1051195 lncRNA downstream 136174 73921734 ~ 73932186 (-) True G924151
TU1051300 lncRNA upstream 52312 74131080 ~ 74131371 (-) True G924240
TU1051308 lncRNA upstream 67059 74145827 ~ 74146073 (-) True G924248
TU1051523 lncRNA upstream 125904 74204672 ~ 74209934 (-) True G924442
TU1051572 lncRNA upstream 227174 74305942 ~ 74391812 (-) True G924486
TU1051580 lncRNA upstream 319879 74398647 ~ 74404518 (-) True G924490
trnal-cag-6 mRNA downstream 1561 74066717 ~ 74066799 (-) True trnal-cag-6
LOC118966652 mRNA downstream 6914 74058166 ~ 74061446 (-) True LOC118966652
XM_036933968.1 mRNA downstream 13636 74046483 ~ 74054724 (-) True LOC110519805
XM_036933965.1 mRNA downstream 59134 73988769 ~ 74009226 (-) True LOC110515220
XM_021619486.2 mRNA downstream 102807 73956273 ~ 73965553 (-) True LOC110534578
XM_036933970.1 mRNA upstream 547 74079315 ~ 74092648 (-) True LOC118936763
XM_036933972.1 mRNA upstream 14419 74093187 ~ 74108411 (-) False LOC118936764
XM_036933971.1 mRNA upstream 14421 74093189 ~ 74108411 (-) True LOC118936764
XM_036989387.1 mRNA upstream 33980 74112748 ~ 74113617 (-) True LOC118966653
XM_036933983.1 mRNA upstream 596012 74674780 ~ 74676826 (-) True LOC118936765
TU1051061 other downstream 436390 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 1142626 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 1162068 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 2304440 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 2320476 71745815 ~ 71747884 (-) False LOC110534950
TU1052402 other upstream 838409 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 859137 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 974348 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 1205223 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 1413365 75492133 ~ 75494111 (-) True LOC110511405

Expression Profile