RNA id: XM_036933972.1


Basic Information

Item Value
RNA id XM_036933972.1
length 3171
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC118936764
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74093187 ~ 74108411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtaccaactgtaaagtctgCAGTTACTCCATCATGATGACAACAACCTCAGTCTAACTCTGGATACCTGTTGAGAGCAGTGaggaaaagacagaaagagagaaaaggggaaaagTGTGTAACAAGGAACAACAAGATAGAGGAGGGGAAGACTGACAGAAGACAGGACACTGGACATTATCCACTTGGAAGTCTCAAGGACCACAGAACAGCTGCAGAGCTCCAGACCAGTAGCCCTACCAGCCAGCCCTACCGTCTCCCCAGCAGAGGTCCAGACCAGTAGCCCTACCAGCCAGCCTTACCATCTCCCCTGCAGAGCTCCAGACCACTAGCTCTACCATTTTCCCCAGAATGGCTCTCTCCGGGTCGGGTGGCTTCCTCTCTGAGGATCAGTTCATCTGTTCTATCTGCCTGGATGTGTTCACCAACCCAGTCTCCACACCCTGTGGTCACAGCTACTGTCTGGACTGCATCTCCACCTACTGGGATGgaggagggaagacgTGTGTGTGCCCGCTGTGTAAGGAGAGCTTCAGGAAGAGGCCGGAACTTCACATCAACCGCACCCTGAAGGAGATCACCGAGCAGTTTAAGAAGATGGCAGACGGATTGGACCGGGGGGCCATGGTGTTTGAAGGAGGGATTGAGAGTCAAGGTTTGGGTGGCGGTGGAAATGAGGGGGTGTCATACGGCGTTGAGCGTCCTCCGGTCCCTCCAAGACCCCCAGGGATGGGTGTGATGCCTGGGGATTTGTTGTTGGAGATGAAGACCAGGTTCCAACGACCTTCGAACTCCAGAACCCCTCCGCCGGTCCTCCACCCCCACCCGCCCTCACCCTTCTCCTCCAACACCACCGCCCTCTCGCCCCCCGCCCCTCCTGTTGTCCCACGCAGATACACCCTGAGCGGGCCGGCTGATTCCTCCACCGATGCGCCTCTCTGTCCTGAACACCAGAGGGGGCTGGAGTTCTTCTGCCGGACAGACCAGACGTGTGGGTGTGCCGTGTGCATGGAGGGAGAGCACCATGGACACCAGGTTATACCAGCCAAGAGAGAGTGGCTCATTAAGAAgTCTCAATTGGAAATCACAGAGGCAGAGCTGAGGGACATGATCACACAGAGAGAAAAGAAGGTGGAGGACATCAGGACATCACTGGAGAACATACAAgtgTGTGCGGAGCATGAGACAGCAGGCAGCATGCATATGTTCTCTGCCCTGGTGAGCTCTGTGGAGAGGAGCCAGGCAGAGTTGTTGGAGGTGATAGAGATGTCACAGCGGGCTGCACAGCACCAAGGACAGACCCTCATCAGAGACCTAGAGCAGGAGATCTCTGAGCTGAGGAAGAGAAGCGCTACCCTCACCCAGCTAGCCCAGTCTGACGACTACGTACTTTTCTTCAAGACATTCTCCACGCCGCCTCAGACCAGGGATTGGTCGGATGCTgttgtgacctctgacctcaccTCAGGGGCGGTGCTTCTGACTGTCAATCAAATGGTGGAGCGGTTTCGGGAGGAGCTCAAGAGACTGCCGGAGATCTGTCTGCGTCCTCAACCTCAAACAGACCAATCTGTGGGGAGAAATATTCCAAGGTTGCGTCCTCAACCTCAACCAGACCAATCTGTGGGAAGATGCAGTCCAAGTTTGCTTTCTCAACCAAACTATGCTGTCGGAAGAAATAGTCCAAATTTACCTTCTCAACCAGACCAGTCCCTGGGAAGAAGTAGTCCAAGTTTGCGTTCTCCACCTCCACCAGAACACTCTGTAGGAAGTCCAGATTGGCTTTCACACCCTCAACCAGAGCAGTCAGTGGGAAGAAATCCAAAACCAAAGGTGAGGAGAGTGCAGGAATATGCAGtggACATAACCCTGGACCCCCTCACCGCCCACCCACGCCTGCTCATCTCCGACGACGGCAAGCAGGTGCGCTGCTGGGACCGCTACCAGCCCGTGGCGGACGGCCCCGAGCGCTTTGACCGTGTGGTCTGCGTCCTCGGGCGCCAGGCCTTCTCTTCGGGACGCCATTACTGGGAGGTGGAGGTGGGTGGGAAGACGGACTGGGACCTGGGCGTGGCTAGCCACTCCATCAACAGGAAAGGGAAGATCACAGTAAGCCCCGCCCACGGCTACTGGTTCCTGAGTCTCCGGGATAAGAACGACTACGCGTTCCGAACGGAACCGTCGACAGCGCTGGGCCTCAACCACAAACCCAACCGTATAGGGATCTACGTAGACTGTGATAAGGGACAGGTGTCGTTCTATAATGTGGACGCTAAGATGCTCATCTATACATTCACCGACAGCTTCTCGGATGTCATTCATCCCTTCTTCAGCCCTTGCACCAATAAGTCTGGCAGGAACGAGGCGCCGCTCATCATTTGTCCTGTCTCGATGCCTCTGGTGGACTGAGAtgggttttagttttttttttgttcattccTAAAGGTAGTTTCCTTCAGTCTGTCCTTGTTCAATGTTCTTCACTGAGCCAATAGGACGGGACTGGATAGGGCAAAGCAATATGGGGGAAGCTATAGCTGATGCGCCCAATATACCCAGATGTCTCATGTCAACATAGGGAAGGGAACAAGGCCAGAAGAGAGGGAACAATTTTCTGCAATGAAATACAGTCTCTTAGAACCATTCATAATGACCTCCTGTGTTCTATGGAGCTGACCAATGGATAATCTGGATACTGAGTCTGGATTGGACTGATCATTTTGACCAATACAACCGACTACAGTCCATCAGTCTGAGAATGAAGGATTTCACCATCTGTCCTTATCACAGGATGGATTAATCTGTCTATATAGGGTCATATGTGTCTCACATGGCTCCCTATTCACATATAGTCTGCttctttgaccagagccccatgggccCTATGTATTGCATTACTATATGGAATAGTGTGTTATTTGTGACATAACCACAGTCATTACAAATAAAACATATTACTTGTACATTACAATCCAGTTTTTGAAGAATGTCCACAATAAACCAAATGTAAACTATGTGGACTGGGAGCCACTGAGTAAGACCCagagacaaacacaaagacaaaGAATCCTTTATGAGCCAGTCAATTTAGTCATCGTATTCTACACAGAGTGGAGAAAACTTTaagaatacctgctctttccatgacatagactgaccaggtgaatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1051262 lncRNA downstream 43964 74048155 ~ 74049223 (-) True G924204
TU1051242 lncRNA downstream 74697 74015239 ~ 74018490 (-) True G924187
TU1051232 lncRNA downstream 111015 73981024 ~ 73982172 (-) False G924178
TU1051233 lncRNA downstream 111015 73981024 ~ 73982172 (-) True G924178
TU1051195 lncRNA downstream 161001 73921734 ~ 73932186 (-) True G924151
TU1051300 lncRNA upstream 22669 74131080 ~ 74131371 (-) True G924240
TU1051308 lncRNA upstream 37416 74145827 ~ 74146073 (-) True G924248
TU1051523 lncRNA upstream 96261 74204672 ~ 74209934 (-) True G924442
TU1051572 lncRNA upstream 197531 74305942 ~ 74391812 (-) True G924486
TU1051580 lncRNA upstream 290236 74398647 ~ 74404518 (-) True G924490
XM_036933970.1 mRNA downstream 539 74079315 ~ 74092648 (-) True LOC118936763
XM_021619480.2 mRNA downstream 14419 74068360 ~ 74078768 (-) False LOC110534571
XM_021619481.2 mRNA downstream 14419 74068360 ~ 74078768 (-) False LOC110534571
XR_002475145.2 mRNA downstream 14419 74068360 ~ 74078768 (-) True LOC110534571
trnal-cag-6 mRNA downstream 26388 74066717 ~ 74066799 (-) True trnal-cag-6
XM_036989387.1 mRNA upstream 4337 74112748 ~ 74113617 (-) True LOC118966653
XM_036933983.1 mRNA upstream 566369 74674780 ~ 74676826 (-) True LOC118936765
XR_005034230.1 mRNA upstream 587652 74696063 ~ 74707724 (-) True LOC118936766
XM_021573272.2 mRNA upstream 650278 74758689 ~ 74760648 (-) True LOC110497259
XM_036933982.1 mRNA upstream 657577 74765988 ~ 74768163 (-) True LOC110518241
TU1051061 other downstream 461217 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 1167453 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 1186895 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 2329267 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 2345303 71745815 ~ 71747884 (-) False LOC110534950
TU1052402 other upstream 808766 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 829494 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 944705 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 1175580 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 1383722 75492133 ~ 75494111 (-) True LOC110511405

Expression Profile