RNA id: XR_005034232.1



Basic Information


Item Value
RNA id XR_005034232.1
length 681
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118936768
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74894734 ~ 74910153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagaggtgaactcaagcagtagaaagttagaggtgatattataggacacaCTATGTGTAACTTTGCTGCTCTgccagcagtttcctgtggagtttttCTAATGTCAGTGTTTCCTGTATGTAGGTGGGTTTAACTGATCTTATCTGCTTAGTTTGTCACGTCATATAAGTAGGGAAGTAATGAGATAGAAGTCATATAGCCTAGCAGTATTTCTCACTCTTCAGTCCTCTCTTCATGACAGTAGACTTGTTTCGCTCAGTGGAGCCCCAGTTAGAGGCAGATATGATACCTGCAGTGGtactgatgaccctgttgtggaGCAGAGatctCCAGGCTCAAAGCGTCAGTCCACCAGCTGAAGACTCAGTCAGACTGGTGGATGGGACCACTTCCTGTTCTGGGACAGTGGAAGTCTTCTACAGAGGAGAGTGGACAGGTGTATGTTTTAGGTGGTGGGGAATGAGGAGAGATGTTAAGGTTGTGTGTAGAGAGCTGGACTGTGGGAATCCTGTATCTGTATCTAGAGGACCTCTGATTGAAGATGGAAGAAGAGGAGTCAGACTATTTAGTATTTGTAGTGGAGATGAGTCTTCTATTAGATGGTGTAAAATCATAGGAGGACCTGGTGTCTGTGATGGTGGATATTATCATCATGTGACCTGTTCAGGCAAGAGACTGGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1052333 lncRNA downstream 52849 74781693 ~ 74841885 (-) True G925053
TU1052351 lncRNA downstream 62074 74831629 ~ 74832660 (-) True G925071
TU1052349 lncRNA downstream 71434 74822993 ~ 74823300 (-) True G925069
TU1052269 lncRNA downstream 85880 74807646 ~ 74808854 (-) True G925010
TU1052302 lncRNA downstream 97881 74706338 ~ 74796853 (-) True G925026
TU1052406 lncRNA upstream 29615 74939768 ~ 74961812 (-) True G925104
TU1052360 lncRNA upstream 52163 74962316 ~ 75030753 (-) False G925075
TU1052362 lncRNA upstream 52163 74962316 ~ 75030753 (-) False G925075
TU1052374 lncRNA upstream 54998 74965151 ~ 74966051 (-) True G925077
TU1052412 lncRNA upstream 69432 74979585 ~ 74986624 (-) True G925110
XM_036933977.1 mRNA downstream 17289 74825186 ~ 74877445 (-) True LOC110511351
XM_036933982.1 mRNA downstream 126571 74765988 ~ 74768163 (-) True LOC110518241
XM_021573272.2 mRNA downstream 134086 74758689 ~ 74760648 (-) True LOC110497259
XR_005034230.1 mRNA downstream 187010 74696063 ~ 74707724 (-) True LOC118936766
XM_036933983.1 mRNA downstream 217908 74674780 ~ 74676826 (-) True LOC118936765
LOC110517287 mRNA upstream 6203 74916356 ~ 74932952 (-) False LOC110517287
XM_036989388.1 mRNA upstream 23846 74933999 ~ 74970163 (-) False LOC118966654
XM_036933980.1 mRNA upstream 125577 75035730 ~ 75085676 (-) True LOC110516473
XM_036933981.1 mRNA upstream 143651 75053804 ~ 75056174 (-) False LOC118936366
XM_036989389.1 mRNA upstream 225971 75136124 ~ 75201466 (-) True LOC118936693
TU1051061 other downstream 1262764 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 1969000 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 1988442 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 3130814 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 3146850 71745815 ~ 71747884 (-) False LOC110534950
TU1052402 other upstream 7024 74917177 ~ 74918259 (-) True LOC110517287
TU1052404 other upstream 27752 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 142963 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 373838 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 581980 75492133 ~ 75494111 (-) True LOC110511405

Expression Profile