RNA id: LOC110517287



Basic Information


Item Value
RNA id LOC110517287
length 1265
RNA type mRNA
GC content 0.57
exon number 6
gene id LOC110517287
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 74890707 ~ 74932952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGATACCTGCAGTGAtactgatgaccctgttgtggaGCGCAGAGTCTGTGCAGCTTGTAGATGGAGCTGAtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgactttgaccggcaggatgcagaggtagtctgtagggatgttggctgtggggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggcaaagagtcccttctcctggactgtgacacctcagacagagagaacaacacctgcctacctggtaatgctgttggactcacctgctcagagcctgatgatgtgaggctggtgggaggaggcagtcgctgtGCTGGTCGAGTGGAGTGGTACGACCAGCGAGAGTGGAGGACTGTGGGAGCTGTCAAGAATCAGGAGGATGTAgctgcagtagtgtgtagacagctggGTTGTGGCTCCACTGTTTCAGTACTACCTGGAAACACCAGTAGAGGGATTGGAGTTAAATGTTCTGGGTCTGAGTTTTCACTGAGGGAGTGTAGAAGAACGTATGAACTCCGtcctggactcacagtgatctgctcagatgactcccaccaagggaactacagctgtgtttatgacaattatgttttctctcataacttctcctctgagagtgagctcctctccctcgtcatcacagCCTCTCCTCTGCCAGCCGTCATCATCAGACATGTTGTAGTGCTGCTGATCCTTCTGACAGCCATCACCACCtcctacctgtactacaagCCCACCAGGAGGCAGATGAGAGTGAACAGGGTGAGCAGCATGGATCTTTATGTCAATGCCTTGGAGACGgtctctctgagctccagagctgaagctggaccgggagaggagagagcagcccaggGGACGGAGTAGGAGTAGAATGAAGCTGACCCTACAtgctgatcttaggtcagttttgtgttttaaatCGATGGTCAGCAGTGGACTGGTGTTTAAAATGTGGTGACAAACCTGAAGTGGTTCTAATTTTAATAACAAGTTCAGAATTAGTTTCTCTTTCTAGAACCTTGGAAGAAATCTAAAAGGAGTGACTGCAACCACCATTATTCATTTAGTTTGGTTTTTACCACCAGagaaacatggggttctgggtaacatggggtttgggtaacatggggttctgggtaacatggggttttaggtaacatggggttctgggtaacatgggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1052385 lncRNA downstream 7609 74860391 ~ 74908747 (-) True G925083
TU1052333 lncRNA downstream 74471 74781693 ~ 74841885 (-) True G925053
TU1052351 lncRNA downstream 83696 74831629 ~ 74832660 (-) True G925071
TU1052349 lncRNA downstream 93056 74822993 ~ 74823300 (-) True G925069
TU1052269 lncRNA downstream 107502 74807646 ~ 74808854 (-) True G925010
TU1052406 lncRNA upstream 6816 74939768 ~ 74961812 (-) True G925104
TU1052360 lncRNA upstream 29364 74962316 ~ 75030753 (-) False G925075
TU1052362 lncRNA upstream 29364 74962316 ~ 75030753 (-) False G925075
TU1052374 lncRNA upstream 32199 74965151 ~ 74966051 (-) True G925077
TU1052412 lncRNA upstream 46633 74979585 ~ 74986624 (-) True G925110
XR_005034232.1 mRNA downstream 6203 74894734 ~ 74910153 (-) True LOC118936768
XM_036933977.1 mRNA downstream 38911 74825186 ~ 74877445 (-) True LOC110511351
XM_036933982.1 mRNA downstream 148193 74765988 ~ 74768163 (-) True LOC110518241
XM_021573272.2 mRNA downstream 155708 74758689 ~ 74760648 (-) True LOC110497259
XR_005034230.1 mRNA downstream 208632 74696063 ~ 74707724 (-) True LOC118936766
XM_036989388.1 mRNA upstream 1047 74933999 ~ 74970163 (-) False LOC118966654
XM_036933980.1 mRNA upstream 102778 75035730 ~ 75085676 (-) True LOC110516473
XM_036933981.1 mRNA upstream 120852 75053804 ~ 75056174 (-) False LOC118936366
XM_036989389.1 mRNA upstream 203172 75136124 ~ 75201466 (-) True LOC118936693
XM_036933984.1 mRNA upstream 470691 75403643 ~ 75412894 (-) False LOC118936770
TU1051061 other downstream 1284386 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 1990622 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 2010064 72905577 ~ 72906292 (-) False G923192
TU1049088 other downstream 3152436 71762461 ~ 71763920 (-) True LOC110514144
TU1049077 other downstream 3168472 71745815 ~ 71747884 (-) False LOC110534950
TU1052404 other upstream 4953 74937905 ~ 74938357 (-) True LOC118966654
TU1052259 other upstream 120164 75053116 ~ 75054381 (-) True LOC118936366
TU1052546 other upstream 351039 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 559181 75492133 ~ 75494111 (-) True LOC110511405
TU1053615 other upstream 1463396 76396348 ~ 76397948 (-) False G926001

Expression Profile