RNA id: XM_036933980.1


Basic Information

Item Value
RNA id XM_036933980.1
length 1990
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110516473
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 75035730 ~ 75085676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTGATCCAAGATAAGTTGCTAAGAAGTTAATCTCACATCATTGAAGTTAGGACATAATGAGAGAGAAGTCATATAGCCTAGCAGTATTTTCCACTCTTCAGTCCACTCTTTGTGACAGCAGACTGTGGAGCCCCAGGTAGAGACAGATATGATACCTGCAGTGGtactgatgaccctgttgtggaGCACAGatctCCAGGCTCAAAGTGTCAGTCCACCAGCTGAAGACTCAGTCAGACTGGTGGATGGGACCACTTCCTGTTCTGGGACAGTGGAAGTCTTCTACAGAGGAGAGTGGTCAGGTGTATGTTTTAGTTGGTGGAGCATGAGAGAGACTAAGGTTGTGTGTAGAGAGCTGGACTGTGGGAATCCTGTAGCTGAATCTAGAGGACCTCTGATTGAAGATGGAAGAAGAGGAGTCAGACTGGGTGGTTGCTATGGAAATGAGTCTTCTATTAGACAGTGTGACATCATAGAAGAACCTGGTGTCTGTAATGGTGAATATTATCATCATGTGACCTGTTCAGagtctgtgcggcttgtggatggagctggactctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgaCTTTGACCGGCAGGATGCAGAGGTAGTCTGTGGGGAGCTTGGCTGTGGggctcctgcagctctacagggagggctctatggagaaggtgagggtcAGACCTGGGATAAAGAGTTTCAGTGTAAAGGCAAAGAGTCCTTTCTCCTGGTGTGTGAcacctcagacagagagaacaacacctgcctacctggtaatgctgttggactcacctgctcagagcctgatgacgtgaggctggtgggaggaagcagtcgctgtgctggtggagtggagtggtacgaccagggagagtggaggactgTGGGAGCTGACGGGGACcaggaggctgtaggagcagtagtgtgtagacagctggGTTGTGGCTCCACTGTTTCAGTACCACCTGGAGACACCACTAGAGGGGTTGAAGTTATCTGTTCTGGGTCTGAGTCTTCACTGAGGGAGTGTTGGAGAAGTTCTTATCTCcttcctggactcacagtgatctgctcagTCCAGCCTGATATTTCCCTGACTGACTCAATGGGAGGGGTCTCCAGGGGCCACCAGGGGTCCGAGATGTTCAGGGGCTACAACTTCACCATCACCTGCTCCACTCAGCCACAGTACCCAGGAGGCTGCTTCCTCCTCACGTTCACCGGCTCCAACATACAGCAGATCCAGccagctgtcaatcactctgctgccttcctcttccctgcTGCAGATGACTCCCACCAAGGGAACTACAGCTGTGTTTATGAGACTGATGTTTTCTCTCATAGCTTCTCCTCTGAGAGtgagctcctctccctcaccatcacAGCCTCTCCTCTGCCAGCCTTCATCATCAGACACGTTGTAGTGCTGCTTATCCTACTGACATCCATCACCACCtcctacctgtactacaagCCCACCAGGAGGCAGAAGAGAGTGAACAGGGTGAGTAGCATGGATCTTTATGTCAATGCCATGGAGATGgtctctctgagctccagagctgaagctggaccgggagaggagagagcagcccaggGGACGGAGTAGGAGTAGAATGAAGCTGACCCTACAtgctgatcttaggtcagttttgtgttttaaatTGATGGTCAGCAGTGGACTGGTGTTTAAAATGTGGTGACAAACCTGAAGTGGTTCTAATTTTAATAACAAGTTCAGAATTAGTTTATCTTTCTAGAACCTTGGAAGAAATCTAAAAGTAGTGACTGCAACCACCATTATTCATTTAGTTTGGTTTTTACCACCAGAGAAACATGGGGTTACGGTAACATGGgatttggggtaacatggggttttgggtaacatggggttttggtaacatggggtttggggtaacatggagtttggggtaacatggggttacggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1052421 lncRNA downstream 881 75003992 ~ 75034849 (-) True G925117
TU1052365 lncRNA downstream 4381 74843007 ~ 75031349 (-) False G925075
TU1052360 lncRNA downstream 4977 74962316 ~ 75030753 (-) False G925075
TU1052362 lncRNA downstream 4977 74962316 ~ 75030753 (-) False G925075
TU1052357 lncRNA downstream 4977 75001023 ~ 75030753 (-) False G925075
TU1052455 lncRNA upstream 18920 75104596 ~ 75105125 (-) True G925148
TU1052469 lncRNA upstream 59245 75144921 ~ 75146315 (-) False G925158
TU1052470 lncRNA upstream 59245 75144921 ~ 75146766 (-) False G925158
TU1052471 lncRNA upstream 59245 75144921 ~ 75146766 (-) False G925158
TU1052472 lncRNA upstream 60441 75146117 ~ 75146766 (-) True G925158
XM_036989388.1 mRNA downstream 65567 74933999 ~ 74970163 (-) False LOC118966654
LOC110517287 mRNA downstream 102778 74916356 ~ 74932952 (-) False LOC110517287
XR_005034232.1 mRNA downstream 125577 74894734 ~ 74910153 (-) True LOC118936768
XM_036933977.1 mRNA downstream 158285 74825186 ~ 74877445 (-) True LOC110511351
XM_036933982.1 mRNA downstream 267567 74765988 ~ 74768163 (-) True LOC110518241
XM_036989389.1 mRNA upstream 50448 75136124 ~ 75201466 (-) True LOC118936693
XM_036933984.1 mRNA upstream 317967 75403643 ~ 75412894 (-) False LOC118936770
XM_036933985.1 mRNA upstream 317967 75403643 ~ 75412894 (-) False LOC118936770
XM_036933994.1 mRNA upstream 405864 75491540 ~ 75494143 (-) False LOC110511405
XM_036933995.1 mRNA upstream 476239 75561915 ~ 75645371 (-) False pcdh7a
TU1052404 other downstream 97373 74937905 ~ 74938357 (-) True LOC118966654
TU1052402 other downstream 117471 74917177 ~ 74918259 (-) True LOC110517287
TU1051061 other downstream 1403760 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 2109996 72905577 ~ 72925734 (-) False G923192
TU1049956 other downstream 2129438 72905577 ~ 72906292 (-) False G923192
TU1052546 other upstream 198315 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 406457 75492133 ~ 75494111 (-) True LOC110511405
TU1053615 other upstream 1310672 76396348 ~ 76397948 (-) False G926001
TU1054495 other upstream 2696336 77782012 ~ 77783305 (-) True G926732
TU1055104 other upstream 2876861 77962537 ~ 77963652 (-) True G927157

Expression Profile