RNA id: XM_036989389.1


Basic Information

Item Value
RNA id XM_036989389.1
length 7571
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC118936693
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 75136124 ~ 75201466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgggtgactgtatctctccagggttggtgggtgactgtatctcACTGCTGGACCCTGACCAGACATGGAGTAGTTGGCTCTGCATTTACATTCACAGCACACCCACCCATCACCGTCAATCACCACACACACCGACAACACTAGAGCACAGTCTATTTGGAGGCTAAATAACTAAATTGATGTCTTAtattttctctttctgtttgtttgttattgtgtgtgtgagagaaagacagagagacagagacagacaaagagagagagcgagaaagagggagggagggaggtagcctTGTTGAGTGAGTGAAGATTAATGTCGCGCTTTTCCCGTGCACGCACCTGCCTTGGGACTAGACTCCACCGGAGCTGCCTCACATTTGAACTGGAAAACCTTGCGCGCGTCGGTGTATCTGGATTAACGGAATGGATTAGAGATCTAAGAACGCCCCTTTCCCATGTCGGAGCAGGAGATGAAGAAGCagcaccctcctcttcctcaccaggatgtccagagagagatcagagaggggGAGTAACTGGGGATACACCATGATGGAGCCCTGATACAGAGGACAGAGCAcagTTAAATGGAGGAGCGGGACAGAAGCCGCTCCCCGTCCCGCAGGACCAGTCGGGTGGAGCAGGTGGTGGGGCGATGGCTACGACGCTCCAGGGATTCCAGCAGCAGAGAGCGTATCCTGGTAGATGGGAAGGCGGCTGCGGGGGGAGAGTCTAGCGGTCAGGATCAGAAGAACAGCTACCCGGTTAGACTGACCGTCCAGATCCTACGAGACCCCCTCCTCAACACTCATGGAATCACCCTGACACCTCAGACACCCATACTGGTGCAGGACATCACCCCAGCAGGGCCGGCTGATGGAAGGCTCGTCCCTGGCGACCAGGTCGTAAAGATTAACAATGTTGCCGTCGACGACCTGACCCCAGAGCAAGCGGCTGACCTCATCAGggAGTGTCAGCACTCTGTGATGATAACGGTCCTCAGAAACTCAGCGGGACCCAAGTCTTCCTTCATCACCCCAGAGAAGAGAGCTAAACTCCGGTCCAACCCGGTCAAAGTTCGCTTTGCTGAGGAGGTTGAGGTCAATAGTCACTCTCAGGGCAACTCGCTGCTCTTCCTCCCCAACGTTCTAAAGGTGTATCTGGAGAACGGACAGACTAAGGCCTTCAAGTTTGAACCCAACACCACTGTCAAGgacatagtgatGACCCTGAAGGAGAAACTGTCTCTGTCTCGTATTGAACACTTCTCTTTGGTTCTGGAACAGAAGTATAGCATCAGTAAACTGCTGTTGCTACATGAAGAGGAGAGGATACAACagGTGGTTCATCAGAAGGAAGTCCATGACTACAGATGTCTGTTCAGAGTGTGTTTTATACCCAGAGAACCTGAGCACCTGTTACAAGACGACCCCACTGCCTTCCAGTACCTCTACCtgcagggtataAATGACGTGCTACAGGAGCGTTTTGCAGTGGAGATGCGTTGCAACACGGCCCTGCGTCTGGCAGCCCTGCACATACAGGAGAGACTAGCCAGCTGTGGACAGTCACCTCGGACCAAACTCAAGATCATCACGAAGAGTTGGGGCATTGAGAACTTTATCTCTTCAACCCTCCTGAGGAACATGAGGGAAAAGGATCTGAGAAAGGCCATTGGCTATCACATGAAGAAGAGCCAATCACAGGAGCCAAAGCAGAAGGTGCTGTCGGCCAATCAGGCGAAGATTAACTACCTGGAGGAGCTGTGTGACCTCAAGTCCTTTGGCGGGAAGTCCTTCAGCGCCACCATGATGcTCCAAGACAGAGAGTCGATGGTGACCCTGTTGGTGGGGTCGCGGTACGGTATCAGTCAGGTGGTGAACCACAAACTGAGCATCATGACCACCCTCACAGAGTTCAGCAGTATCACACGCATAGAGCTGCTACCAGAGTCTGACCGCGTCAGTCTGGTCAAGATATATCTACAGGACATCAAGccgATCACCCTGTTGTTGGAGTCAATAGCAGCTAAGGAACTGTCCTGTCTGGTGGCAGGGTACTGTCGTGCCCTAGTGGACCCCAGCCTCATCATCTTCCCCTGGACACAGGACGGCAAGCAGCACCGCGTGTCTGCTGAGGAGGgTTATGTGTCACGGGGTGGCAGTGACTCGGACGATTCCTCCGACATGGATATGGACACTCTCATCTCCCTTGTATCCCATAACAACAAGCGAACCACATCAGACCCGTGGAGCCCCCTCATCCCCAGCCTCACCCACGAGAGGgagtggagaggagggggaggagagtgcagaggagggggaggagagtgcagaggagggggaagagggaggagatcGGGCAACGGAGCTTGGGTCAACTCTCACCATTCTCCCATGACCCCTGACTCTATGAACTCTGAACCTGTGACCCCCGTTGTTGACCCCTCTGAGAACCTGAACTACGCTGAGCTCTCTCTCATGCTGGAGTACCTCCCCAGTCCTCCGGAGGCGAGTGAcgatgaggatgaggaggggaagagggaagagaggaggaggagtaatgAAGGAACTGGACCGGAGGTATTTTCTGCATCCGGATGTCcccgttcctcctcctcctcacttatGGACTGTGTGTTTACCTTCGATCAGAGCGACGCGAGGCATTACTACAATATCTGCCCTAATGTTACCCCCGACAGCACCCGCAGCCTCACCCACCCTCACCCTGAGACTGAGGAAGAGGAAGGTGGTGGTGAGGAGGAAGAGCAGGGGGGGCTCCTAACCTTGGAGCCCGTGCCCATCCTCCAGCCGCCTCCAGGGTTCGGAGACAGCAGTTCTGACGAGGAATTCTTTGATGCGAGGGATCGGATCGCCTCGCCTGAAGACCCAACATCAGGGACTGTGTCCAGAGatttttcagCCGAGATGACGAGTGGAATGACGCAGCAAACTGTGAGCCTGAGTGACATCAGAATCAGCCTGGCTGAAGGAACGAggcatgaaagagaggaggagggtagagagggcgAGACCagcgaaggaggaggagggagagacatgtTCTCCAGGCTCTCTAGGAAAAGATCGAAGAAACGGCGTTCCTTCATGCAGACCGACTTCACCTCAACAGTCTCCTACCCTGGACCGGATGAAAACCAGGAGCGGAACAGGAACCCAGATCACGTTCCTGATCAGTATCGGGACCGGGCACAGAACCGGAGAGAGAGCTCAGACGAAAGCCAGCAGCTGAGTCTGGACCCAGAACCATCTGAGCAGAGCCAGAACCCAtgtcctactgtctcctctctgagcCACGCCGAGGGTGAGGCATCCCAGCTCGAGTCCAAGCCTATCCTCGCCAAGCCCAGTCCAGAGGGGTCCCATCGGGGACCTGGAGAGCCATGTGTGCTTGGTAACCCAAAGGGAAATCCACGGGCGCCTGATAACCCGAAGGGTGACCTCCATAGGAGCTCCAGGAACAGGCGGCAGTCCATGGAGACGGAGCCCGACATGATGGAGTCCAAATCGGTCACGGCCCTGGTGACGGCAGCCTCCCTCTCCATCACGGCTGTCCGCTGTAGAGTAGAACCAGACGGCAAGGAGAGCCCTGATCGGAGAGGAgacggggaggaggtggagggagagatggaggaagaggaggggggtggagaagCAGGGGCAGGACCATTCACATGTCACATGTTTCTAACTGAGattaaggaggaggaggggcagaggggggaggaaacaggggaggagggggagagcgacagagaggagagacagcccTCGCTCATTTCTGAAGGACCACCCTCTGTTAGGGGGTCCCAATTTAGTAGACGACCTCTGTGTCTCACgaaagaccaggatcaggaagCCTCTTTCGTACCCCAAATAAGTATCTCCCATCCAGGTGTGTATGGGAGGGACACGGGGGGTGAACAAGGCGTGGCTGGTGGTGAGGAGAGCGTGACTCCCCtttctgctcctcctccccccacctctccactgCCACCATTCCCAGCCCCCTCCATcccccacacagagagaggagagagggatagcaaGGATGGGAATGTTTGGTCTCAACCCAAACTTTTCACACtctcagacagagagaaggacatTAGCTACTTGACTCAAGTCCATAGAAAACTCGCTATCAGTCACCAAGACCTGACAAGCCAAAGGAAAGCAGAAATTGACAATGATGAAGCTATAGATAGCACTAATTCTGTTACTGATAACACTGATGTTGCTACGGCTAACATTGCAGCTACAGGTAACAGTCATTCTGTCATGGCTAACACTGAGACTACAGTTGACTCTGATTTAGCCATTGCTAATCACAAAGATACAAACAGCATCAAATCTGTTCCAGCTAACACTATAGCTTATGCCGATTTTGCTATGACTAACAATGAAGCTAATGCTATAATTAATTCCCTTACAACTAGCAATGATTCTACAAGTAATGCTAACTTAGCTATGACTAATGCTAATTCAGCTAATGCCAACTCAGCTATGGCTAACATTCCCAAAGAGTCTCCCATATCACCTACAACAGGCTTCCTCCTCCGGCCTTGCTCACCGGGCATCATCGGGCAAAGCCTCTCGGCCTCCACATTACGGGGGAAGATCCAGAGCCTGCCCCTCTATTTATCTCGCTCCCAGGAAACCCTCAACCTCTCTGGGGTGGGAAGCCCCAACAGGAGCCCCTCTCCGGAGACCACCAGCAACAAGACTGAGGTAATGGTCACCACCGAAACCACCAAGTACGACGATGTCACAAAGGTGGCAACAGGGGAGGATTTGAAAGATTCCGGGGTGGCGTTGGTAGAATCGGATGATTCTGAGGTTACGCTGACTGAATCGGAGGTTGGCGAGGTTGTTGTGGAGACGGCCGGGGCGGAAATCACGAGGTTGACGGTTTCAGAGGTCAAGGAGGTGATCGAGAAGGTTGTGATGGTCTACggatcctcccttcctccccctttaGCACCCATCTCTCTAGAGTCCAAACCAGATCCCAAAATGGTTGTCAAGTTGCCTACCTGTCCCATTGCTACAGTGGAAACTGCCCCTCCTATGGCTCCAGCACCTATCTGTCTGGAGCCCAAACCAGTCCCTGAACTACTCTCCCCAGGCTCCACTATCCACAAAATGGCCGCCCCATTACCTTCCTGTCCTTCCTTTCCCGTGCCCATACGCGTAGAGCCCAAACCAGACCATGAACCACTATCCATACACTCCAAAATGGCCGCCTTGTCGTCTTCTTATCCCCCTGCTTTAGTGGTAACCACAGAGAGTCTGAATTCTTCTTCTTCTAATCCTCACCCCATCAGAGTAGAACCCAAGCCAGAGCCTTGCCCCGAACCCCTTTCAGGCCCCAAAATGTCTGCTCCGTTGTCTTCCTGCCCCTCTGCTTTAGTGGTGACCACACAGAGTCTGAACGGACCGGGGCTCAGCTTCCCTGGTTCTAACATGAGAGGACAGCCATTTGGGAGCAACAGCTTCTGTAGACCCCCAGGTGAGGAGGCAGGCCTGCTGAACACTCTGACTACAGGGTGTGGGGTCTTCACCTCCACCTGTGAGACCCAGCCCAACCAGGCCCACATGGAGTCCTATTCGCCGGCAAAGCCTGACTTTGGGTGTAGCTCGGTGCTGGCGTCAGGGTGCGAGACGGTCCTGGAGGGGGTGCAGACGCCCCTGGAGGCATGCAGGTGTCCACCACCACTGGTGTATACCAACTGTTTCAGCGGGGGTGACAGCTTCGACGATGAGTTGACAGTTTACGAGTTCTCCTGCCGGACAAGTTCTCCTCCCGCCTCCCAACCCTCTTCCTCTGCGCTGGCCCTACCTCTCacgacctctcctcctctctcctctttcctctcctcctcccctccctcctccctcctctctccctccttccctcgctccgtcctgcccccctcctcctccatggaGCTCTCACCACTCCTCTCCCCGCTCCTTTCCCCGTCCAACTGCTTCTTGTCCCAGTCAAGTCTCCATGATGATATCAGCCGACTACGCCACCGCCGCTTCCCACCGCCCCCCGCAGGGTTCCAGACCGTCCGGAGCGACGTGGACAAGCTTCTCACCCTCCTGCagggtgggaggatggggagCAGAGGGGGGAGGCACCCCAGGGAGACCTGCGCCACCCACTTCTCAGAGAACAAGCGTCTTCTCCACGGGGAGGCCCGGAGGCTGATGGCTGGCTGTCAGAAGGTGGTCCGGGTGGGGCAGACCCCAGACGAGATGCTCTTCTCCCTCTCCGACAGCTTCAGGACCCTGGTGGGCATGGCCGGCATGTGCCTATGGTTCTCTGGGTGCGACCGGTGCGACCGGAGGAATGCCGAGGCACTGGCGGGGCTGGCGGACGTGGCCAGAACGTACCGGGAGTTTGTGCTGGCGGCGGAGAGGGCGAGCGGGAGGCGGAGCTGTCATGACCTCAGCACCAAGCTCCTTGCCAAGCAGTGTACTGCCCTCACTGCTTCCGTCTTCTGCCTCACACAGCTGTTCCGCACACTCACCGCGCTCTGAACTGAACCAACGATCTCTGACCCCTATAACATGTCGGTTGACCTTTCAATTCTGACCTCTAGACCCACTACACAGAGTTgccagccaatcagtcagtcaccAGGCTGAGTGGGGAATGAATGTGTGAACTGCAACAGGTCCACGTAGCGACAAAAAAAAAGTAGAAGCACaattgaaaggagagagagatgagacaagaCGGGATGAAACAAGACGGTTCTAGTGTCCTGTGACATCATGGAGAGCCTCTGTGGCATCATAAATAAGGAACCTCTATGACATCACAAAGTGCCtgtgtgacatcacagagaacaTGTGACACGCTGGAAGACATAAAAGTGATGTCATAACAGGTCCCAAATGACTGTTCAGCTTTTTTAAccgtaacctacagtacactgtgCTGAAACCACACGAGGGACAAACTGGACATACGTAACATCATCACCACACTGCAAGAAGCCTCACGCAATGACAATCTCCGGACTCAAAGCCAACCTGCTTGCGTTAATAGAGTATTTAAGTAACTATTATATTTTAATGtcaattatttatttgttttcattcattatttatttgttttgattcattatttatttgttttcattcattattatttgttttgatgtattatttatttgtGATGTTATCACTTTGATTATTGATTCTGTATGGTATTGGTGTGGGGTGTGAGAAAGAGGAATGTGGAGGGGTGTGTTTACAGAAAAGAGGATCTATGTATCTACACAAACACTCCAGAGTTGGCTGAAATGTACAGGCATGTTGATTGTGTTATTATTTGGCTGATCAGTCAGTGGAAGGTTTGATTTGATACTTCTAATACTTTTAATACAGATTTCTGACAACTACagatactctgtctctctctctctctgtctctctccctctgtctcttcctctctgtctctccctctctgtctctctccctctgtctctccctctctgtctctctccctctgtctctccctctctg

Function

GO: NA

KEGG:

id description
K23954 FRMPD1; FERM and PDZ domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1052455 lncRNA downstream 30999 75104596 ~ 75105125 (-) True G925148
TU1052273 lncRNA downstream 75214 75060289 ~ 75060910 (-) True G925014
TU1052421 lncRNA downstream 101275 75003992 ~ 75034849 (-) True G925117
TU1052362 lncRNA downstream 105371 74962316 ~ 75030753 (-) False G925075
TU1052495 lncRNA upstream 3409 75204875 ~ 75224082 (-) False G925177
TU1052496 lncRNA upstream 3409 75204875 ~ 75224862 (-) False G925177
TU1052500 lncRNA upstream 3409 75204875 ~ 75311688 (-) True G925177
TU1052514 lncRNA upstream 17825 75219291 ~ 75239255 (-) True G925188
TU1052510 lncRNA upstream 37110 75238576 ~ 75240552 (-) True G925186
XM_036933980.1 mRNA downstream 50448 75035730 ~ 75085676 (-) True LOC110516473
XM_036933981.1 mRNA downstream 79950 75053804 ~ 75056174 (-) False LOC118936366
XM_036989388.1 mRNA downstream 165961 74933999 ~ 74970163 (-) False LOC118966654
LOC110517287 mRNA downstream 203172 74916356 ~ 74932952 (-) False LOC110517287
XR_005034232.1 mRNA downstream 225971 74894734 ~ 74910153 (-) True LOC118936768
XM_036933984.1 mRNA upstream 202177 75403643 ~ 75412894 (-) False LOC118936770
XM_036933985.1 mRNA upstream 202177 75403643 ~ 75412894 (-) False LOC118936770
XM_036933994.1 mRNA upstream 290074 75491540 ~ 75494143 (-) False LOC110511405
XM_036933995.1 mRNA upstream 360449 75561915 ~ 75645371 (-) False pcdh7a
XM_036934004.1 mRNA upstream 1178801 76380267 ~ 76417746 (-) False LOC110513050
TU1052259 other downstream 81743 75053116 ~ 75054381 (-) True LOC118936366
TU1052404 other downstream 197767 74937905 ~ 74938357 (-) True LOC118966654
TU1052402 other downstream 217865 74917177 ~ 74918259 (-) True LOC110517287
TU1051061 other downstream 1504154 73630142 ~ 73631970 (-) True G924041
TU1049957 other downstream 2210390 72905577 ~ 72925734 (-) False G923192
TU1052546 other upstream 82525 75283991 ~ 75284673 (-) True G925211
TU1052668 other upstream 290667 75492133 ~ 75494111 (-) True LOC110511405
TU1053615 other upstream 1194882 76396348 ~ 76397948 (-) False G926001
TU1054495 other upstream 2580546 77782012 ~ 77783305 (-) True G926732
TU1055104 other upstream 2761071 77962537 ~ 77963652 (-) True G927157

Expression Profile