RNA id: XM_036933984.1



Basic Information


Item Value
RNA id XM_036933984.1
length 636
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118936770
representative False

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 75403643 ~ 75412894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tctctgacacacacaccttttctctacacactctctcacacactcattctctctctctacacacactttCTCCATCTCACACTCTCTACGTACACACTTCCTGTCTGTTAAATAACAGTGTCAGGAATATCATCTATCATGGTGGGCTACTGTCCCATCTGTGGGAAACCAGTCTACTTTGGTGAGAAGAAGAGGTCATTGGGGAGGGACTACCACCCTCTGTGTCTGAAGTGTCAACTGTGTCAGAGACAGTTGACCCCGGGACAACATGctgagCATGATGAGAAACCCTACTGCACTAACTGTTACATGAAGATGTTTGGTACCAGAGgtAACAGGAGAATGATGTCAAACTGTCACAgctcagcctcctcttcctcttcctcctcctaggAACCAGTCTAACAAACCAAAAACCAACCAAAATACAACCTAATGAGAACTAACAGGTTATCAACAAGGATCTATGTTCAACAAACCTGACATTCAACCATCAAGCCAAAGACCAACCAACTAGACCCAAAATTCAGCCAACCAACGTTTGACCAACCAATAAATAACCAATAGACAACCAAGCTGACATTGAACAAACTACTATCCAACAAACAGACATCAGTGTCACTCTGAAAGATCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1052600 lncRNA downstream 3424 75397308 ~ 75400219 (-) True G925255
TU1052537 lncRNA downstream 33297 75274651 ~ 75370346 (-) False G925205
TU1052536 lncRNA downstream 33297 75316071 ~ 75370346 (-) False G925205
TU1052540 lncRNA downstream 34257 75368621 ~ 75369386 (-) True G925205
TU1052569 lncRNA downstream 35068 75315456 ~ 75368575 (-) True G925229
TU1052620 lncRNA upstream 10038 75422932 ~ 75423253 (-) True G925270
TU1052632 lncRNA upstream 34935 75447829 ~ 75450110 (-) True G925278
TU1052633 lncRNA upstream 45255 75458149 ~ 75467649 (-) False G925279
TU1052634 lncRNA upstream 45451 75458345 ~ 75467649 (-) True G925279
TU1052625 lncRNA upstream 61257 75474151 ~ 75480591 (-) False G925273
XM_036989389.1 mRNA downstream 202177 75136124 ~ 75201466 (-) True LOC118936693
XM_036933980.1 mRNA downstream 317967 75035730 ~ 75085676 (-) True LOC110516473
XM_036933981.1 mRNA downstream 347469 75053804 ~ 75056174 (-) False LOC118936366
XM_036989388.1 mRNA downstream 433480 74933999 ~ 74970163 (-) False LOC118966654
LOC110517287 mRNA downstream 470691 74916356 ~ 74932952 (-) False LOC110517287
XM_036933994.1 mRNA upstream 78646 75491540 ~ 75494143 (-) False LOC110511405
XM_036933995.1 mRNA upstream 149021 75561915 ~ 75645371 (-) False pcdh7a
XM_036934004.1 mRNA upstream 967373 76380267 ~ 76417746 (-) False LOC110513050
XM_036934001.1 mRNA upstream 967373 76380267 ~ 76417756 (-) False LOC110513050
XM_036934000.1 mRNA upstream 967373 76380267 ~ 76417790 (-) False LOC110513050
TU1052546 other downstream 118970 75283991 ~ 75284673 (-) True G925211
TU1052259 other downstream 349262 75053116 ~ 75054381 (-) True LOC118936366
TU1052404 other downstream 465286 74937905 ~ 74938357 (-) True LOC118966654
TU1052402 other downstream 485384 74917177 ~ 74918259 (-) True LOC110517287
TU1051061 other downstream 1771673 73630142 ~ 73631970 (-) True G924041
TU1052668 other upstream 79239 75492133 ~ 75494111 (-) True LOC110511405
TU1053615 other upstream 983454 76396348 ~ 76397948 (-) False G926001
TU1054495 other upstream 2369118 77782012 ~ 77783305 (-) True G926732
TU1055104 other upstream 2549643 77962537 ~ 77963652 (-) True G927157
TU1055319 other upstream 2969375 78382269 ~ 78434096 (-) False G927317

Expression Profile