RNA id: XM_036934052.1


Basic Information

Item Value
RNA id XM_036934052.1
length 3311
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110512491
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78057349 ~ 78067236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAATCCCACACagagctgttcttaggcacaacacGGAGTGTCTGGACACAGCccctagccgtggtatattggccatataccacaaacccccgaggtgccttattgctgttataaactggttacaagTGTAATTAGAACAGGAAAAatgcatgttttgtcatacccctgGTATATGTctaatataccatggctttcagccaattaGCACTCAGGGCTCTACCACCCAGTTGATAATTAGATATAAGCAACTGGAGACAACTCACCACTCACCACCATATTTTGGTCCATGGCCATGGTTCCAACATGGCCATTTAGCCAAGTCCCCAATGCCTGGCCAACGCTTGCACCATGAAGCGCAGGTGGAAAGACAGACAGCGAATGGACAGGCACATCGCGGCGCCTGCGCATAATGACGAGGTTTCTGTTTAGAGTTCTACCACAAATCAACAAGTGGATCGACATTAAACTAAGTGGGATCATTAAACAAGGGGGAAGATGAACAATCGCCTCTCTCAAAGCAAATGACAGGATCATTTATGAAATGGCAACAAAGGAATGAACAAAAGTCATGAGTTACACACtgaagaaaagagagggaaataAACACAAAGTGGAACAAAGTGGGCGGAAAGGAGAggaagtgagaaagaaagaggaagagaaacacaTCTACTAGAGGGGCTATTAGAGCAACCGTTCATCAGTTTACACTGCAGGTTGAGGAACGTCACACTCCTCGTGAGTTTAACCACTAGGCCTACTATTTTGACAACTAGTGTTAGTGTGCTATGATCTCAAATTCTACTGCGGCCACCACTTCAAGAATGAGTTGTTTGAAACGTGTCATAAAACGTGTCATCTGTAACTTCTTCTGATACTGCAAGTCATTCTATAGACAGTCTAATGATCTTCTACATTTAGATTTACAATTAGGTCATTTaacagaggctcttatccagagcaacacaAGTCTTCCAtcctaaaaaatacatttaaaaaacttgTTGAGAAGGGGAGTTAACCCGTATATTTTCTGATAAGTGCCGTTTGAATTGGAATGCCACGTCTTATCTCTCCCACCCAGCACTTCTTTCTAGTGATACAGCTACTTTTCAGCCAGACACTCTCAAATACTCAAAACAACTatcaagagggatagagagcgagggagagagcgagggagagagagagggagagagagagcgagggagggagggagagaacgagagggagagagagagcgagggagagagtaagggagagagagggagggagggcatatAGAAAAGTAAGACAAGAGTCAGAGGATAGAAAAAGGGTCTCTTTGAATACAGTCACCCACTAACCCCACATTAATAAGACAACAAGAACAGTCCTTTGAGTGACAGTTAAAcaggcagccagtcagtcagtcaaagcAGGGAGTCAGCCAGGCAAGTAGCTATCAGtcggtcagccagccagtcagagcaGGGAgtcagtccatctctctctcagtcggtcagccagccagccagccagtcagagcaAGGACTCAGTCAGCCAGGCaggtagctagccagccagtcagccagcctgtTAATCAGGGAGGATGCTGGGATGCGGTGGGGGTGGAGTGGGGTTGCGGTACAGGCTGACCCTGGCCACAGGGCTGGTGGAGTGTCTGTGTTTTGCCGGCGTGGTCTTCGGCTGGGCATCGCTGGTCTTCGTCCTGAAGACAGACGGTTACTTCACTGACCTATGTGTCAATCTGACTACTGGACCCAACAGTACAGTGGAAACAGacTGTAGTGGACAGGATGAACAGTTCTCCCTGGTCTTCACCGTCACCTCCTTTATGAACAACTTCCTCACGCTTCCCAACGGATTCATCTTCGACCGCTTCGGCACCATGGCAACGAGGCTTCTGGGAATATGTCTCTACACCACTGGTACACTGATGGTTGCCTTCTCCAGTTCAGctTTGTCCATGCTGCTGTTCCCAGCCCTGTCCTTCATCGCAGTGGGAGGTATATTGTTCCTCATCACAAACATACAGGTTGGGAACCTATTTGGCTCCCATCGTTCCACCATCATCACCCTCTATAATGGAGCCTTCGACTCTTCCTCGGCTGTCTTCCTCATCATCAAGGTGATGTATGAAGGAGGGGTCTCCCTCCGCTCCtccttcctcattctctctgtctgcagTGTCATCCACCTCCTCAGGACGTTCTTCCTCATGCCCAACACCCACATTCCCTACCCACTCCCCGAGGGCTTCACCTATGGCGTAAGCCCTGGAAAGTCCAACAGCTACAACGTAGAGGAGATTGAGAAGACGCGAGAGATGGGGATGACATCGgagggggaggggccagctgagacTGACGACATGCCCCTACAGCCTGATGATGGGCAGCAGTCGGAAGACTCTGGGAAAGtggccAGTTTCAGGAGTTGTGTACAGTCGTGGTTCTTCCTGTGGCATCTGGTGTGGCTGTCTGTCATGCAGCTGAGACACTACCTCTTCATCGGAACACTGAACCCCATGCTCAACCGGCTGGCCGACAACGACTCAGCCCTGGtgaGTCAGTACACCAATGCCTTTGCCTTCACCCAGCTGTGTGGGGTCCTCTGTGCTCCCTGGAACGGCCTCATCATGGACAGACACAAGGGGAAGCCTCTGGCTCCAGGAGAAACAGATAAGGAGGCAGACCtacgctcctcctctctctccctcttcctcacctccctccagtgcctcctcttctccatctgcgcctcctctcctctcctccctctccagtacCTCACCTTCATCCTGCAGGTCCTCAACCGCTCCTTCCTCTACGGAGGCAACGCAGCCTTCATCAGCATCGCTTTTCCTGGGGTCCACTTTGGGAAGCTGTATGGTTTGGTGATGTCTCTGTCTGCCGTGGTGTCACTGCTGCAGTACCCCTGTTTCGCCCTGGTCAAAGGAGCCCTAGGTGGAGACCCCTTCTATGTGAACATCGCTCTGACTCTCCTCACTCTACTGGCGTTCATCCATCCAATCAACATCTTCTACCACTGCAGGAAACTGACCAATCAGAGGGAGGATATGGCCGGTGGTGCTGCCATCACATTGGCTGAGGCCAAAATGTAGGGCACATTACATGATGGTCCTGAGCCAAGGGAAACAGGAATTGTCTTATTTCTAATTGTTTAAAGGGAATATGTGACTATGTAAAATAATAAAACGCTTTTTTATACTTATGTTTTACAGTAATCCCATATTCCATCAGTATGTTTTGTTGGATAGTTGTCAATAAAAATGATTATCCATTA

Function

GO: NA

KEGG:

id description
K08230 SLC43A3; MFS transporter, LAT3 family, solute carrier family 43, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1054657 lncRNA upstream 8934 78043606 ~ 78048415 (+) True G926847
TU1054656 lncRNA upstream 13093 78043606 ~ 78044256 (+) False G926847
TU1054655 lncRNA upstream 13872 78043214 ~ 78043477 (+) True G926846
TU1054654 lncRNA upstream 14258 78042662 ~ 78043091 (+) True G926845
TU1054637 lncRNA upstream 43220 78004868 ~ 78014129 (+) True G926829
TU1054682 lncRNA downstream 116889 78184125 ~ 78197726 (+) True G926867
TU1054686 lncRNA downstream 141196 78208432 ~ 78209231 (+) True G926871
TU1054569 lncRNA downstream 178753 78245989 ~ 78247524 (+) True LOC110518385
TU1054720 lncRNA downstream 227352 78294588 ~ 78301627 (+) False LOC118936780
TU1054723 lncRNA downstream 227352 78294588 ~ 78313434 (+) False LOC118936780
XM_021573216.2 mRNA upstream 259 78053654 ~ 78057090 (+) True LOC110497216
XM_036989396.1 mRNA upstream 4145 78031634 ~ 78053204 (+) True LOC110498611
XM_036934061.1 mRNA upstream 110912 77937479 ~ 77946437 (+) True LOC118936778
XM_036989393.1 mRNA upstream 322858 77722258 ~ 77734491 (+) False LOC110510687
XM_036934062.1 mRNA upstream 443936 77608058 ~ 77613413 (+) True LOC110497185
XR_002469651.2 mRNA downstream 84 78067320 ~ 78070325 (+) True LOC110497220
XM_036934038.1 mRNA downstream 51274 78118510 ~ 78141506 (+) True LOC110518069
LOC118936774 mRNA downstream 80233 78147469 ~ 78175162 (+) True LOC118936774
XM_036934039.1 mRNA downstream 148151 78215387 ~ 78246338 (+) False LOC110518385
XM_036934043.1 mRNA downstream 198234 78265470 ~ 78289833 (+) True LOC110497212
TU1054174 other upstream 332296 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 603434 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 761340 77293833 ~ 77296009 (+) True G926448
TU1053430 other upstream 1173107 76879645 ~ 76884242 (+) False LOC110531901
TU1054800 other downstream 452796 78520032 ~ 78530601 (+) True LOC110497229
TU1054938 other downstream 708699 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 985255 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 1133045 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 1214150 79281386 ~ 79284144 (+) True G927606

Expression Profile