RNA id: XR_002469651.2


Basic Information

Item Value
RNA id XR_002469651.2
length 1981
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110497220
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78067320 ~ 78070325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGAATCACGCAGTCCAAAACAAACCAGTTGGCGATCACATATACATTTAGGCTGATAAAGATTGGTATTCAAGGTTTTCGTCTCGTGTAGGCAAGAGTTGCAATTTCCGATGAACACCCAATATCCTGAGTTTCACAACAGCTTTAGAAATGGAGGAAACCACGTTTAGCTACAATTTTATTCCGAGTCGAAGGATGGATGAAGTGATCGACGTGATGCGATCTAGTTTTACACAACTTCAAAAACAACTGAACGGATCTTTACATATGTCAGAGGAAGTTGTGGTTTTATTTCTGTCCATCTCTGAAGTGCCGTTGGCTCGTTGTATGGGTTCTCTGCAAAAAGCGTTACTGGCGGAGATAACCAAGCTGTCGAAAAGTCAGGTCGCCGACGTTCTTACGGTGAAAGGTCCAGTACCGAGAACGGAGAGAGCAGAGTACTTCAGTTAGCGGCGGAAGAAGCTGAAAATGAAGATGTCAGTTACGACAACGATGGCACAGACACAGGTCACATGTAGACCACAGTGATACCAAAGCAGACCCAGATCCATCATACTGTGGCAGTGGATCAAGCCTCCACCACACATGTAGTCGTCTGTGGCCATATGTTCAGGACAGGATGATGCACCTAGTgtccacacgggagagaagccttactcctgctccgACTGCAACAAGACCTTCCACAGACAGGTCCACCACATGGAGGACAGTGACCACGCCTTTGAGGACTGCAACAAGACACCCCTTCACCTGAAGCTCCACTCAGAGGACAAGCCCTCTGTCTGTCCAGACCGTGGCAAGGGATTCCTCTGGCTCGACCGCCTCCACCGCCGTACCCACGTTACAGAGCCCAAGTCCGGGAAGATCCACGTGCCTGCGGGCGTTCACCAGGGAGTGACACCTTAATGTTGAGCACGGCGTCGAACCGTCCACCCCCGTGGGTCAAAGTTGAACTGTCATCTGGATTGGAGGCGAAGACTAGGACAGTCCAGGTCAAACCGCCTTCGTTCAGGTGTTTTACAGGTCTGAACTGGATCACCACAGCTGTGACGAGGAGACGGAGACATAGACAGTTCCAGCAGAAGAGGAGGATCACAATGAAGAAGTCAGAGCAGTTTGATGTTGAAAGAAGAAAACGTGTTCCCGTCTTATAAACTACTTCTGTCAGTGTCTAGTAGTACACTCCATAGACACCAGCTTGTGTCAGGTAGCAGGGAATACAGGTCTAGGACCAGTTGTTAGAACGCATCTTGTCAGCACCAAGAACAGGTCTAGGACCAGTTAGACTGCAGCTTGTGTCAGGGCCGGGGAGTGCTGTAGCAGCAAGAACAAGTCTAGGCACTGTTGTTTGAATGCAGCGTGGGTCAGCAGGAAGAACAAGTCCCAGGCCCGTTTTTATGATTGTAGCCAACCAGGGAGTGGGACAGCCTCTGACCTTGTTCCAGGCACCTGTAGTGAGGTTCACAACTCCTGGTAGAGTCACAGCACCATCTACAGCCCAAACAGTGAAACTACTCTGCGACTAGTTTACATGCCTGTGGTATCATCCAAAGCAACACCCATAGCACCAGTATAGTATCCAAACCCATAGTAACACTAGTAAATCCCTGACAAGTCTCACCCGTAGCAGCTAAACACAGTAGCAGCACCAGTCACCTCCATGGCCAGACCAGACATCACAACTATGGCAGCACCAGTCACCTCCATGGCCAGACCAGACATCACAACTATGGCAGCACCAGTCACCTCCATGGCCAGACCAGACATCACAACTATGGCAGCACCAGTCACCTCCATGGCCAGACATCACAACTATGGCAGCACCAGTCACCTCCATGGCCACACATCACAACTATGGCAGCACCAGTCACCTCCATGGCCAGACCAGACATCACAACTATGGCAGCACCAGTCACCTCCATGGCCAGACATCACAACTATGGCAGCACCAGTCACCTCCATGGCCAGACCAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1054657 lncRNA upstream 18905 78043606 ~ 78048415 (+) True G926847
TU1054656 lncRNA upstream 23064 78043606 ~ 78044256 (+) False G926847
TU1054655 lncRNA upstream 23843 78043214 ~ 78043477 (+) True G926846
TU1054654 lncRNA upstream 24229 78042662 ~ 78043091 (+) True G926845
TU1054637 lncRNA upstream 53191 78004868 ~ 78014129 (+) True G926829
TU1054682 lncRNA downstream 113800 78184125 ~ 78197726 (+) True G926867
TU1054686 lncRNA downstream 138107 78208432 ~ 78209231 (+) True G926871
TU1054569 lncRNA downstream 175664 78245989 ~ 78247524 (+) True LOC110518385
TU1054720 lncRNA downstream 224263 78294588 ~ 78301627 (+) False LOC118936780
TU1054723 lncRNA downstream 224263 78294588 ~ 78313434 (+) False LOC118936780
XM_036934052.1 mRNA upstream 84 78057349 ~ 78067236 (+) True LOC110512491
XM_021573216.2 mRNA upstream 10230 78053654 ~ 78057090 (+) True LOC110497216
XM_036989396.1 mRNA upstream 14116 78031634 ~ 78053204 (+) True LOC110498611
XM_036934061.1 mRNA upstream 120883 77937479 ~ 77946437 (+) True LOC118936778
XM_036989393.1 mRNA upstream 332829 77722258 ~ 77734491 (+) False LOC110510687
XM_036934038.1 mRNA downstream 48185 78118510 ~ 78141506 (+) True LOC110518069
LOC118936774 mRNA downstream 77144 78147469 ~ 78175162 (+) True LOC118936774
XM_036934039.1 mRNA downstream 145062 78215387 ~ 78246338 (+) False LOC110518385
XM_036934043.1 mRNA downstream 195145 78265470 ~ 78289833 (+) True LOC110497212
XR_005034237.1 mRNA downstream 242888 78313213 ~ 78317604 (+) False LOC118936780
TU1054174 other upstream 342267 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 613405 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 771311 77293833 ~ 77296009 (+) True G926448
TU1053430 other upstream 1183078 76879645 ~ 76884242 (+) False LOC110531901
TU1054800 other downstream 449707 78520032 ~ 78530601 (+) True LOC110497229
TU1054938 other downstream 705610 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 982166 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 1129956 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 1211061 79281386 ~ 79284144 (+) True G927606

Expression Profile