RNA id: TU1054569


Basic Information

Item Value
RNA id TU1054569
length 1505
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110518385
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78215387 ~ 78247524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATGTAGAGAATAATTTGTGGTTTCATATACAGGTTTTACACATGTATTGGTCTCTTAAATAATTTACTTCAAGAATGATTACTACGTAGACTTTAAATCTGTTTTTAATGGATCACACCTTCTAATAGTGATTTGTTCAATGACTTCATTGCTTTGAAGACATTAGTTTGGATACAGTGTAATTCATAATCAGTGAACATCAGTAATGCAACTTCATTAAAACTCTTCATGGATGcttgatatacactaccgttcagaagtttggggtcacttagaaatgtccttgtttttgaaagacaagcaattttttttgtccattaaaataacatcaaattgatcagaaataaagtgtagacattgttaatgttgtaaatgactattgtagctggaaatggttgatttttttatggaatatctaggcgtacagaggcccattatcagaaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttataattttaaatggctaattgatcattagaaaacccttttgcaattttgttagcatagctgaaaactgttgtcctgatttaaagcaataaaactggccttctaaagactagttgagtatctggagcatcagcatttgtgggtttgattacaggctcaaaatggccagaaacaaagacctttcttctcaaactcatcagtctattcttgttttgagaaatgaaggctgttctatgcgagaaattgtcaagaaactgaagatctcatacaatgctgtgtactactcccttcacagaacagagcaaactgtctctaaccaggtagaaagaggagtgggaggccccggtgcacaactgagcaagaggacaagtacattagagtgtctagtttgagaaacagacacctcccaagtcctcaactggcagcttcattaaatagcatcctcaaaacaccagtctcaacgtcaacagtggagaggcgactccgggatgctggacttctaggcagagtttctctgttcagtgtctgttctttttcccctcttaattttttcttcttattggccagtctgagatagggctttttctttgcaagtCCTCaattacccccaacagcccaactccagtccccctgtacccccaacagcccaactccagtcctcctgtacccccaacagcccaactccagtcctcctgtaccctcaacagcccaactccagtcctctagtaCCCCCTGTTAGAGCTGATTTGGACATATTTGTATAAAAGACTGAACATACGGAGCTCCATGTATATTTGtgtaaatatattaaatatgAATGTATATGATGGAATATTAGGTACGTACCTTTTTATGATTTATATTTACCTGATTGAGATATATTAATTTGTTAGTGTAACTCAGTTTTTGGCCCCCCCTCTTGCCCATTCATTGTATTGTGGTAAGTGTGTTAGGATAAAGGCAGGAAGTTGGACATTCGGGGGAGGGAGTCCTTGCTAGATGCGGGAGCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1054686 lncRNA upstream 36758 78208432 ~ 78209231 (+) True G926871
TU1054682 lncRNA upstream 48263 78184125 ~ 78197726 (+) True G926867
TU1054657 lncRNA upstream 197574 78043606 ~ 78048415 (+) True G926847
TU1054656 lncRNA upstream 201733 78043606 ~ 78044256 (+) False G926847
TU1054655 lncRNA upstream 202512 78043214 ~ 78043477 (+) True G926846
TU1054720 lncRNA downstream 47064 78294588 ~ 78301627 (+) False LOC118936780
TU1054723 lncRNA downstream 47064 78294588 ~ 78313434 (+) False LOC118936780
TU1054724 lncRNA downstream 47064 78294588 ~ 78331698 (+) True LOC118936780
TU1054729 lncRNA downstream 48296 78295820 ~ 78298290 (+) True G926903
TU1054761 lncRNA downstream 88239 78335763 ~ 78336007 (+) True G926922
LOC118936774 mRNA upstream 70827 78147469 ~ 78175162 (+) True LOC118936774
XM_036934038.1 mRNA upstream 104483 78118510 ~ 78141506 (+) True LOC110518069
XR_002469651.2 mRNA upstream 175664 78067320 ~ 78070325 (+) True LOC110497220
XM_036934052.1 mRNA upstream 178753 78057349 ~ 78067236 (+) True LOC110512491
XM_021573216.2 mRNA upstream 188899 78053654 ~ 78057090 (+) True LOC110497216
XM_036934043.1 mRNA downstream 17946 78265470 ~ 78289833 (+) True LOC110497212
XR_005034237.1 mRNA downstream 65689 78313213 ~ 78317604 (+) False LOC118936780
XM_036934064.1 mRNA downstream 108237 78355761 ~ 78384072 (+) True LOC118936781
XM_036989398.1 mRNA downstream 141499 78389023 ~ 78432765 (+) True LOC118966656
XM_036934068.1 mRNA downstream 198221 78445745 ~ 78452257 (+) True LOC118936487
TU1054174 other upstream 520936 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 792074 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 949980 77293833 ~ 77296009 (+) True G926448
TU1053430 other upstream 1361747 76879645 ~ 76884242 (+) False LOC110531901
TU1054800 other downstream 272508 78520032 ~ 78530601 (+) True LOC110497229
TU1054938 other downstream 528411 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 804967 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 952757 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 1033862 79281386 ~ 79284144 (+) True G927606

Expression Profile