RNA id: XM_036989399.1



Basic Information


Item Value
RNA id XM_036989399.1
length 834
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC118966657
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 78634160 ~ 78643493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAGACGCATATCAGAGCAACTACTCAACTACTAGTCACTGAAGTTAGaatcatacagtatatattaccattaggagTCAGGTAGAAAGGGATTCATTAGTAAGTTAATACTATAAGTAAAAGTTAAAATCATATATATCACAATATCAGGTCAGTCAGACTGAATTAGTTGATTAATAAATTGATTGTGGTCATCATTGATATTCGGTACGGTTAGTTAAGATGGCCGACTACATCAACAAACAGGTGATTGAATTAAACAAAGTTAATGAAGAAAACCAGAATAGAGCAACGAGGAGCCTGAAGACTGAGACCCATCTCTCAGATAGAAGACTAAGACCCTACAGGCTGGCTGCTGTGTGTTTAGGAGTGCTGTGTGTTCTACAAGTCACTCTCAACATTTCCCTGAGGCTGGCTTTCTACAACAGAGGCAATGAGACTGTGGAGAAAAACccgctacagaccagttacaacactaagactaaagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaaggATAGAGATGATCTCATGTCAAAGTTCTCTAATCTGAAACAAAAATGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACAGTGAAAAAACCCTGGAGGGAGAGTAGACAGgactgtctggagagaggagcagatcTGGTGATCGTAAACAGTGATAtggaacagGAGTTTCTCTTTGGCCTTACTAAGAGAGcctggattggtctgactgactctgttactgaggggacctggaaatgggtggacggcaccccactgaccaccccGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1054868 lncRNA upstream 26664 78606339 ~ 78607496 (+) True G927006
TU1054861 lncRNA upstream 41192 78592120 ~ 78592968 (+) True G926999
TU1054855 lncRNA upstream 47062 78586681 ~ 78587098 (+) True G926994
TU1054848 lncRNA upstream 57759 78573496 ~ 78576401 (+) True G926988
TU1054796 lncRNA upstream 76091 78555991 ~ 78558069 (+) True G926954
TU1054964 lncRNA downstream 190663 78834156 ~ 78834407 (+) True G927077
TU1054968 lncRNA downstream 205411 78848904 ~ 78854165 (+) False G927080
TU1054967 lncRNA downstream 209722 78853215 ~ 78854165 (+) True G927080
TU1054994 lncRNA downstream 264629 78908122 ~ 78908521 (+) True G927098
TU1055002 lncRNA downstream 285653 78929146 ~ 78930875 (+) True G927105
XM_036934076.1 mRNA upstream 95851 78535124 ~ 78538309 (+) False LOC110497242
XM_036934072.1 mRNA upstream 100999 78519650 ~ 78533161 (+) False LOC110497229
XM_021573227.2 mRNA upstream 132533 78495351 ~ 78501627 (+) True LOC110497227
XM_036934070.1 mRNA upstream 151307 78475963 ~ 78482853 (+) False LOC110497234
XM_036934071.1 mRNA upstream 151307 78475963 ~ 78482853 (+) True LOC110497234
XR_005034240.1 mRNA downstream 80565 78724058 ~ 78727002 (+) True LOC110534505
XR_005034239.1 mRNA downstream 83506 78726999 ~ 78730160 (+) True LOC110497250
XM_021619501.2 mRNA downstream 132387 78775880 ~ 78777576 (+) True LOC110534589
LOC118966658 mRNA downstream 143265 78786758 ~ 78787742 (+) True LOC118966658
XM_036989400.1 mRNA downstream 162301 78805794 ~ 78816438 (+) True LOC110534603
TU1054800 other upstream 103559 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 909107 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 1180245 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 1338151 77293833 ~ 77296009 (+) True G926448
TU1053428 other upstream 1749918 76881146 ~ 76884242 (+) True LOC110531901
TU1054938 other downstream 132442 78775935 ~ 78787563 (+) True G927061
TU1055067 other downstream 408998 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 556788 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 637893 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 954152 79597645 ~ 79600772 (+) True LOC110514189

Expression Profile