RNA id: TU1055051


Basic Information

Item Value
RNA id TU1055051
length 326
lncRNA type read_through
GC content 0.42
exon number 4
gene id LOC118936790
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79003589 ~ 79004205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGGACCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGGTGGTCCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGGTTCATGTCTAACTGTTAACATAGAGTCACATAGAGGTGATTTGTGGCACAAATTCTGTGTATGCAAAAACGAGTATGCTGCCTGGagatctctctctttttccctccctaCTCCCAACGTTCCATCCCTCGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055036 lncRNA upstream 2589 78999965 ~ 79001000 (+) False G927124
TU1055037 lncRNA upstream 2589 78999965 ~ 79001000 (+) False G927124
TU1055038 lncRNA upstream 2589 78999965 ~ 79001000 (+) False G927124
TU1055039 lncRNA upstream 2589 78999965 ~ 79001000 (+) False G927124
TU1055040 lncRNA upstream 2589 78999965 ~ 79001000 (+) True G927124
TU1055618 lncRNA downstream 63419 79067624 ~ 79067968 (+) True G927550
TU1055619 lncRNA downstream 64573 79068778 ~ 79069054 (+) True G927551
TU1055623 lncRNA downstream 66749 79070954 ~ 79071306 (+) True G927555
TU1055630 lncRNA downstream 71438 79075643 ~ 79076371 (+) True G927560
TU1055632 lncRNA downstream 90062 79094267 ~ 79094699 (+) True G927562
XR_005034244.1 mRNA upstream 7776 78994971 ~ 78995813 (+) True LOC118936789
XM_036934099.1 mRNA upstream 8747 78985870 ~ 78994842 (+) True LOC110517676
XM_036934098.1 mRNA upstream 8890 78984364 ~ 78994699 (+) False LOC110517676
XM_036934097.1 mRNA upstream 8890 78984366 ~ 78994699 (+) False LOC110517676
XR_005034243.1 mRNA upstream 61234 78939438 ~ 78942355 (+) True LOC110516209
XM_036934101.1 mRNA downstream 19364 79023569 ~ 79065796 (+) False LOC110515636
XM_036934100.1 mRNA downstream 19365 79023570 ~ 79065796 (+) False LOC110515636
XM_036934104.1 mRNA downstream 155302 79159507 ~ 79163060 (+) False LOC110513572
XM_036934102.1 mRNA downstream 155316 79159521 ~ 79164674 (+) False LOC110513572
XM_036934103.1 mRNA downstream 155317 79159522 ~ 79164674 (+) False LOC110513572
TU1054938 other upstream 216026 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 472988 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1278536 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 1549674 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 1707580 77293833 ~ 77296009 (+) True G926448
TU1055067 other downstream 48286 79052491 ~ 79065547 (+) True LOC110515636
TU1055659 other downstream 196076 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 277181 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 593440 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 722840 79727045 ~ 79757044 (+) True LOC110532970

Expression Profile