RNA id: TU1055067


Basic Information

Item Value
RNA id TU1055067
length 1357
RNA type TUCP
GC content 0.52
exon number 8
gene id LOC110515636
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79023569 ~ 79065796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTAGAATGTGTCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTAGAATGTGTCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTAGAATGTATCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTAGAATGTGTCAGTGTGGTGATGTCATAATGTGGTACAGACTCAACAGTTAGAatgtgtggtgtggtgatgtcaTAGTCATAATGTGGTATAGACTCAACAGGTAGAATGTGTCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACAGTTGGAATGTATCAGTGTGGTGATGTCATAATGTGGTATAGACTCAACACttagaatgtgtctgtgtgtgtcttaacagtaacactgtgtgtgtgcaggtttcCCTCCTCCCAGcggcccccctccctctctcatccccacCTTGGACAGCAGTGGGCATCCAGGTGGATATGATGTTCGTCCCGTTCCACCATACCCCTTCCCCACAGGTGGTTTCCCTCCTCCTATGACAGgtggCTACCCTCCTCCTATGCCAGGTGTGGTGTCTCCATGGCCTCCTATGATGGACCAGTCTAAACAGTGGGACTActaccctccagGACCGGGACCGGGACCAGGACCCAGACGGGAGGacaagagggagaaggagagagagagacccagggagagaccacatgagagggagagagagcgagagcacagCCCCTCCACTATGGCTTACAACAGTGACGAGGAGCGGTACCGCGGTTACCGGGAGTACCAGGCGGAGCGTGGCTACAGCGGCGGTGACCGTGGAGGGGGGGAGCGTGGCGGTGACCGTGGGAGTGGTGGTGAGCGTGGTGGTGGAGGCGGGGAGCGTCACAGAGACAGGTCGAGCcgtgagaaggaggagagacacagagagagaagacacagagagaaggaggaggggagacacAAGTCATCACGCAGTAGCAGCAGGAGGAGACATGATAGTGAAGAAGGAGACGGTCACAGGAGACACAAACACAAGAAGAGCAAGAGGAGCAAGGAGGGCAAGGAACCTAGTGATGACATGGGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGagaacaccctcctctccctctgtatctctctctctctctctctgtctacatggGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGagaacaccctcctctccctctgtatctctctctctctctctctgtctacatggGAGGAGACCAGGAGAACCAGGACACCATGGAGTGATGAAGAaaacaccctcctctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055009 lncRNA upstream 30727 78982045 ~ 79021764 (+) True G927109
TU1055049 lncRNA upstream 48286 79003589 ~ 79004205 (+) False LOC118936790
TU1055051 lncRNA upstream 48286 79003589 ~ 79004205 (+) False LOC118936790
TU1055054 lncRNA upstream 48286 79003589 ~ 79004205 (+) True LOC118936790
TU1055036 lncRNA upstream 51491 78999965 ~ 79001000 (+) False G927124
TU1055618 lncRNA downstream 2077 79067624 ~ 79067968 (+) True G927550
TU1055619 lncRNA downstream 3231 79068778 ~ 79069054 (+) True G927551
TU1055623 lncRNA downstream 5407 79070954 ~ 79071306 (+) True G927555
TU1055630 lncRNA downstream 10096 79075643 ~ 79076371 (+) True G927560
TU1055632 lncRNA downstream 28720 79094267 ~ 79094699 (+) True G927562
XR_005034245.1 mRNA upstream 48309 79003690 ~ 79004182 (+) False LOC118936790
XR_005034246.1 mRNA upstream 48309 79003690 ~ 79004182 (+) False LOC118936790
XR_005034244.1 mRNA upstream 56678 78994971 ~ 78995813 (+) True LOC118936789
XM_036934099.1 mRNA upstream 57649 78985870 ~ 78994842 (+) True LOC110517676
XM_036934098.1 mRNA upstream 57792 78984364 ~ 78994699 (+) False LOC110517676
XM_036934104.1 mRNA downstream 93960 79159507 ~ 79163060 (+) False LOC110513572
XM_036934102.1 mRNA downstream 93974 79159521 ~ 79164674 (+) False LOC110513572
XM_036934103.1 mRNA downstream 93975 79159522 ~ 79164674 (+) False LOC110513572
XM_036934105.1 mRNA downstream 102157 79167704 ~ 79171045 (+) False LOC110513571
XR_005034247.1 mRNA downstream 142319 79207866 ~ 79209040 (+) True LOC118936792
TU1054938 other upstream 264928 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 521890 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1327438 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 1598576 77440418 ~ 77453915 (+) False LOC110534594
TU1054139 other upstream 1756482 77293833 ~ 77296009 (+) True G926448
TU1055659 other downstream 134734 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 215839 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 532098 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 661498 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 961455 80027002 ~ 80028219 (+) True G928206

Expression Profile