RNA id: TU1055644


Basic Information

Item Value
RNA id TU1055644
length 871
lncRNA type sense_over
GC content 0.45
exon number 3
gene id LOC110513572
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79159507 ~ 79164674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTCCATGCAATGACATTGTAACCAAATATTTACGAAATCAAATACGGGGAGTGTGTCTGTGCACGTTTTTTGCTATACATGCTATGAATTTGTACCCGCCATTTACAAAATCTATACGGGGAGTGTGTCTGTGCCAGTTGTTGCTATACATGCTCTGAAAGACAAAGTTGACCGACATAGTTTTACAATATGACACCAATGTCTACGGGATTCACAGATGAGCGACAGGGCGAAGCACAGagtcCTGTAGGAATGGATTACATCCCCacagaagatgagaggagagtctTCAGAGAATGCAACCAGGAGAGTTTCTGGTACAGATCCGTGCCCTTCTCAGTGGTCAGCATGCTTGTCACTCAAGGCCTCATCCATAGAGGTAGGCCCACCTCCCACCACCCATCATCACTATATCTTAGTGTACGATAGTGTATGATCTAGGAGAGCATCTCAATACTCTGATATAGAATAGTAGCTTCATGTTAGAGATACCTTAATGACAAGTGGCGTCCAAGATGATAGTGTATGATCTAGGAGAGCATCTCAATACTCTGATATAGAATAGTAGCTTCCGGTTAGAGATACCTTAATGACACGTGGCGTCCAAGATGAACGTGCAGAGACGACAGCCAAAAAGATGGAGGTGTTTTCTGCAGAGGTCTGCAGATGTATCACACCTATACATTTTTTTGATTGTCTGCAACCCACCTGGTCGACACTTACCTTTTCTACCATGAATTGGACTAGTGACATCAAGACCGACTCTCCTGTGTTCCTTCCCGTCTTAACCCTGATGACATCAAGACTGACTCTCCTGTGTTCCTTCCTGTGTTTTAGGAGCTCTGACGTTGTCGTCCAGGTTTGGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055636 lncRNA upstream 13922 79144482 ~ 79145678 (+) True G927566
TU1055634 lncRNA upstream 41800 79117264 ~ 79117800 (+) True G927564
TU1055632 lncRNA upstream 64901 79094267 ~ 79094699 (+) True G927562
TU1055630 lncRNA upstream 83229 79075643 ~ 79076371 (+) True G927560
TU1055623 lncRNA upstream 88294 79070954 ~ 79071306 (+) True G927555
TU1055646 lncRNA downstream 4645 79165565 ~ 79166163 (+) True G927571
TU1055627 lncRNA downstream 9476 79170396 ~ 79170871 (+) False LOC110513571
TU1055628 lncRNA downstream 9476 79170396 ~ 79171045 (+) True LOC110513571
TU1055647 lncRNA downstream 12610 79173530 ~ 79173863 (+) True G927572
TU1055654 lncRNA downstream 32106 79193026 ~ 79194260 (+) True G927579
XM_036934101.1 mRNA upstream 93804 79023569 ~ 79065796 (+) False LOC110515636
XM_036934100.1 mRNA upstream 93804 79023570 ~ 79065796 (+) False LOC110515636
XR_005034245.1 mRNA upstream 155418 79003690 ~ 79004182 (+) False LOC118936790
XR_005034246.1 mRNA upstream 155418 79003690 ~ 79004182 (+) False LOC118936790
XR_005034244.1 mRNA upstream 163787 78994971 ~ 78995813 (+) True LOC118936789
XM_036934105.1 mRNA downstream 6784 79167704 ~ 79171045 (+) False LOC110513571
XR_005034247.1 mRNA downstream 46946 79207866 ~ 79209040 (+) True LOC118936792
XR_005034404.1 mRNA downstream 84414 79245334 ~ 79245497 (+) True LOC118936979
XR_005034470.1 mRNA downstream 86496 79247416 ~ 79247579 (+) True LOC118937074
XR_005034480.1 mRNA downstream 88582 79249502 ~ 79249665 (+) True LOC118937085
TU1055067 other upstream 94053 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 372037 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 628999 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1434547 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 1705685 77440418 ~ 77453915 (+) False LOC110534594
TU1055659 other downstream 39361 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 120466 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 436725 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 566125 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 866082 80027002 ~ 80028219 (+) True G928206

Expression Profile