RNA id: XM_036934105.1


Basic Information

Item Value
RNA id XM_036934105.1
length 1714
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110513571
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79167704 ~ 79171045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGGTTTCAGGGCACTGCGGCGGATGTTGATATTCTGTTTTGGAGACCACAACCAGAGTTAGCTAGCGAGCTTTCGTCGTTGCcggagttttttttgttgttagttgttgtttGGTTGTTGTCTGACTTTTTTAAAATCGTTTTTCAACCGGGGGAAGGAACCCACTCCCCAAACGACGGCACCGTGTCTCTCCCGGCGCCTCACCGGGGAAACGCGAGGCCGAGTCGTGCGATGATGGAGGACTTCGACGAGAtctacgaggaggaggaggaggaagaggaggacgaggagagggCCGCGGAGGAACAGCTGTTAAAGTACGCTCCAGACCCGGTGGTCGTCCGAGGATCTGGCCACGTCACTGTGTTTGGACTCAGTAACAAGTTTGAGTCAGAGTTCCCATCGGCACTTACAGGGAAGGTGGCGCCAGAGGAGTTCAAGGCCAGTATAAACCGTGTTAACGGCTGTCTGAAGAAGACGCTGCCAGTGAATGTGCGTTGGCTGCTGTGTGGCTGTCTCTGTTGCTGCTGTACACTGGGCTTCAGTCTCTGGCCCGTCATCTGTCTGAGCAAAAGgacacaGAGATCCATGGAGAAGCTGTTGGATTGGGAGAACAGCAGACTGTACCACAAGctGTGTTTGCATTGGAGGCTGAGCAAGAGGAAGTGTGAAACCAACAACATGATGGAAtatgtaATCCTGATAGAGTTCCTACCCAAGATCCCCATTTTCAGACCGGACTAGCTCTCCGCAGCCCCACCCACATCCTCCCGTGGTGCCTCTCTTCACTCGGCCCAGTCACCTCTCCAAAAtggcctcctctttcctcccctaaCCAGGCCCATACCCCTAAAACAAAACCACCATTTAATGTTTACTGGACATTATCTAACTTCTCTGTCTAGCCCCTCTATATACCCAGAAAACACCTGTTTACACCCTAAAGCCCCTCCCCTTCTCTGATGTCAACCTTCGACCCCAGATCTGTTGGAGGAGACGTGGCCTTTTGACTGTCATCGGTCTGTGGGTCATCATGGGAGACCCAGCTCAGAAAGGGTGTAAACGGTACCATAGAACTGTGGCACTGGAGAAAGTGGACTCCTAATTTTGGACCTGCACTGATGGACCTCCTCTTCACAGCCCTTCCCTGTACACGAGGCACAATCTTTACTCAAGATTTATACCCCCGTTATATTGTACCCCAACCTGAACTATGAGACACTCTGTGCTGTTGGAACAGTTGATCTTATACTCTGTTCTAGAACCTCTGTGGAACCGCTGAGGTGACAATCAATGGATTAGCTACGGAACTTCTACAGAACTTCAATGGAACTAATATAGAACATTGACAGAACTTCAATGGATTAGCAAACGGAACGGCTATGGAACTGACAGAACTTCATTGGAACAGCTATGGAACTGACAGAACAGCTATGGAACTGACAGAACATTAGAACAGCTATGGAACTCCCAACGGAACgtcattgggctcccgagtggcacagcgttctaacacactgcatctcagtgctaagaggcgtcactgcagtacctggttcgatttcaggctgcatcacatccggctgtgattgggagtcccacagggcggcgcacaattggcccagcgtcgtccggggtaggccgtcattgtaaataataatttgttctttaaatgacttgcctagttaaataaaggttaaatacaaatggAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055646 lncRNA upstream 1541 79165565 ~ 79166163 (+) True G927571
TU1055643 lncRNA upstream 6784 79159600 ~ 79160920 (+) False LOC110513572
TU1055644 lncRNA upstream 6784 79159600 ~ 79160920 (+) False LOC110513572
TU1055645 lncRNA upstream 7258 79159600 ~ 79160446 (+) True LOC110513572
TU1055636 lncRNA upstream 22026 79144482 ~ 79145678 (+) True G927566
TU1055647 lncRNA downstream 2485 79173530 ~ 79173863 (+) True G927572
TU1055654 lncRNA downstream 21981 79193026 ~ 79194260 (+) True G927579
TU1055665 lncRNA downstream 47777 79218822 ~ 79281152 (+) False LOC118937004
TU1055666 lncRNA downstream 47777 79218822 ~ 79318667 (+) True LOC118937004
TU1055682 lncRNA downstream 104970 79276015 ~ 79292617 (+) True LOC118936978
XM_036934102.1 mRNA upstream 3030 79159521 ~ 79164674 (+) False LOC110513572
XM_036934103.1 mRNA upstream 3030 79159522 ~ 79164674 (+) False LOC110513572
XM_036934104.1 mRNA upstream 4644 79159507 ~ 79163060 (+) False LOC110513572
XM_036934101.1 mRNA upstream 101908 79023569 ~ 79065796 (+) False LOC110515636
XM_036934100.1 mRNA upstream 101908 79023570 ~ 79065796 (+) False LOC110515636
XR_005034247.1 mRNA downstream 36821 79207866 ~ 79209040 (+) True LOC118936792
XR_005034404.1 mRNA downstream 74289 79245334 ~ 79245497 (+) True LOC118936979
XR_005034470.1 mRNA downstream 76371 79247416 ~ 79247579 (+) True LOC118937074
XR_005034480.1 mRNA downstream 78457 79249502 ~ 79249665 (+) True LOC118937085
XR_005034488.1 mRNA downstream 80543 79251588 ~ 79251751 (+) True LOC118937094
TU1055067 other upstream 102157 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 380141 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 637103 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1442651 77722229 ~ 77725053 (+) False LOC110510687
TU1054149 other upstream 1713789 77440418 ~ 77453915 (+) False LOC110534594
TU1055659 other downstream 29236 79200281 ~ 79202981 (+) True G927584
TU1055684 other downstream 110341 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 426600 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 556000 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 855957 80027002 ~ 80028219 (+) True G928206

Expression Profile