RNA id: XM_036934112.1


Basic Information

Item Value
RNA id XM_036934112.1
length 3554
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110511089
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79222288 ~ 79237169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctccctcatcccctctccctccacctcgtGTCTCAACACAGGAAGACATGGACCTTACGGGTAGAAGACAAAACATCTGAGCTGAGTGAGCTGTGACTTAcatctaaaatgagtctctctggggggagagaggaggggacaacTGCCTCTGAAATGAgcctctctggggagagagaggaggggaccacTGCCTCTAAAATGACTCAAGACACAAGTTCTAAGAGTGTCCTGAAGCCCAGAGCAGTGTCACCTACAACCAGCCTGCTATCAATGAAGTGTGATCGGCCACCTGCTTTCAGCCAGGAACCATTACCAGATGACAATAAGGAAGTGGAGAGTTTGGACAGTGAGGATGCATTAAAGATCACACACAACCTTCTGGACAGAAGAAGTCAAACTCTGCTGACAGTCCAACAAGACATCAAGGCTAAACTGAAACACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTCTGTTCAAGGACATCTACACAGACctctacatcacagagggtggaaGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGGCATCCAAGAAACTAACCACACAAGAGACACCAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCAATCAGAACTGTGCTGACCAAAGGAATCGCTGGTGttggaaaaacagtctctgtgcagaagGTCATCCTTGACTGGGCAGAGGGAAAAGCAAATCAGGACGTTCATTTCATGTTTCCTCTTCCTTTCCGTGATCTGAACCTGAAAAAGGACCAATACAGTCTGATGCAACTTCTTTCCCACTACTTCCCAGAGCTGAAAGAGATTGACAGCATTGAAGATGGTGAAACCAAAACTGTTTTCATttttgatggtctggatgagtgtCGACTTCCTCTAGACTTAACAAATGATGAGAAGTGCTGTGATGTCACGATGCCAACCTCAGTGGACGTGCTACTGACAAACCTCATCAAGGGGATtctgcttccctctgctctcctctggataacCACACGACCTGCAGCAGCCAATCAGATCCCTCCTGAGTGTGTTGACCAAgtgacagaggtacgagggttcaatgaTCCACAGAAGGAGGTGTACTTCAGGAAGAAAATCACAGATCAGAATCTGGCCAATGAAATCATCAAATACATGAAGACATCAAGAAGCCTACACATCATGTGCCACATACCAGTCTTCTGTTGGATATCAGCCACTGTCCTTGAGATGATgctgaaagagacagagaaggatGAAGTCCCCAATACTCTGACCCAGATGTACTCACACTTCATGCTCATCCAAATCATTGTGAAGAACAGGAAGTACAACAAAGCCACAGAGACAAGCCCAAAGGAACTGTCTCAGTCAGACAAAGAGATGATCCTGAAACTGGCAAAGCTGGCTTTCCAACAGCTGCAGAAGGGCAACCTGATCTTCTACGAGGAGGACCTGAGAGAGTGTGGTCTTGACGTCACAGAGGCATCAGAGTACTCAGCATTGTGTACAGAGATCTTTAAAGAAGAATCTGGGCTGTACCAAGAGAAGGTCTACAGCTTTGTGcatctgagcattcaggagtttctAGCAGCAGTGCATGCTTTAGAATCATGTCTGGAcaagaaggaaaatgtttttcCCACCACTAGTGATGATGAAGAGAAGAAGTCAATCCAGTTGTCTGACTTACACAGGAGAGCAGTGGACCAGGCCTTGAAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggtctctcactggagtccaatcagaatCTGTTACGAGGCCTTCTGACACAGACAGGAAGTACCACACGGAGCAATAAGAAAACAGTTGAGAGAACAGTCAGGTACCTTTCAGACAAGATCGACGAAGAATCCTCACCAGAAAGGATCATCAACttgttccactgtctgaatgaacttGGTTCCAACTCTCTAGTTGAAGACATGCAGACCTCCCTGCGATCAGGAACTCTTTCAGAAACAAGACTAAAACCTGACCAATGTTCAGCCCTGGCCTACCTGTTACTGATGTcagaggaggtgctggaggagTTTGACCTGAAGACATACAGCACATCAGAGGAAGGTTATCAGAGGTTGCTGCCGGTAGTGAAAACCTGCAAGAGAGCACTACTAGCTGGCTGTAAACTCACATATGAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGGAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTTCTAGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAGCTGCAGCTGAGAGACAATGACCTGCAGAACTCAGGAGTTACattgctgtctgctggactggaggatccagaCTGTAAACTAGACACACTGGGtctaggtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAACTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagaCTGTAAAATACACACACTGGGgctgtctggctgtctggtcACAGAGGAGGGCTGTGCTGCTCTGTcttcagctctgaggtcaaacccctcccacctgaaagagctggacctgagctacaatcacccaggagactctGCAGGGGAACTGCTTTCAGCTGCTCTGGTGGATCCCACATATAAACTGATGAAGCTGAATGTGGATCATGGTGGAGAGTGCAGGCTGAAATCAGGGCTGAGGAAATATGCCTGTCATCTCACCCTGGACCCAAATACAGCACACCCACACCTGATACTGTCTGAGGGGAACAGGAAGGTGACACGGGTGGTGGAGGACCAGCATTATGAAGACCATCCAGACAGATTTGATTGTCTTCATCAGGTTCTCTGCAGAGAAGGCTTATCTGGGTGTCGTTATTACTGGGAGGTGGAGATGGATGGTACCGGGGCAGTCATTGGTGTGGTGTACAGAGGAAtgaagaggaagggaaggggggTTGACAGTGACATTGGAGGCAATAAGAAGTCCTGGTGTTTATTCTGCTCTCATAGTGGTTATTGCTTTTACCATCCTGGAGTCTGTTGCAGATCCATCCCTGGTCCTGTTTCTAACAGAGTtggagtgtatctggactggtCAGCTGGTACTTTGTCCTTCTATAGTGTGTCCTCCTCTGGTACACCGACACACCACCTTTACACAGAACACACCACATTCACTGAACCCCTCTATCCTGGGTTTGGTGTttcctcctcctcagtgacctCAGTGACCCTGCGTCAGATAGATGACCAACACATTCAGAGAAATAGAACTacagaccatggtggagagagttgtatcaagcctggacctgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055740 lncRNA downstream 28037 79191947 ~ 79194251 (-) True G927647
TU1055760 lncRNA downstream 34539 79186013 ~ 79187749 (-) True LOC118936937
TU1055759 lncRNA downstream 35005 79186013 ~ 79187283 (-) False LOC118936937
TU1055757 lncRNA downstream 49257 79172815 ~ 79173031 (-) True G927659
TU1055756 lncRNA downstream 49488 79172547 ~ 79172800 (-) True G927658
TU1055778 lncRNA upstream 39016 79276185 ~ 79281152 (-) True G927676
TU1055800 lncRNA upstream 84414 79321583 ~ 79321962 (-) True G927693
TU1056046 lncRNA upstream 98342 79335511 ~ 79335721 (-) True G927879
TU1056060 lncRNA upstream 133409 79370578 ~ 79377153 (-) True G927891
TU1056064 lncRNA upstream 134947 79372116 ~ 79372872 (-) False G927893
XM_036934111.1 mRNA downstream 85 79212795 ~ 79222203 (-) True LOC110511088
XR_005034363.1 mRNA downstream 34512 79187235 ~ 79187776 (-) False LOC118936937
XM_036934110.1 mRNA downstream 38725 79175205 ~ 79183563 (-) True LOC110513570
XM_036934107.1 mRNA downstream 41300 79175205 ~ 79180988 (-) False LOC110513570
XM_036934109.1 mRNA downstream 41816 79175205 ~ 79180472 (-) False LOC110513570
XM_036934113.1 mRNA upstream 54022 79291191 ~ 79330506 (-) True LOC118936793
XM_036934139.1 mRNA upstream 549461 79786630 ~ 79802415 (-) False LOC110531688
XM_036934138.1 mRNA upstream 549461 79786630 ~ 79802558 (-) True LOC110531688
XR_005034364.1 mRNA upstream 853393 80090562 ~ 80094309 (-) True LOC118936938
XR_005034254.1 mRNA upstream 905525 80142694 ~ 80145965 (-) True LOC118936799
TU1055345 other downstream 712357 78507077 ~ 78509931 (-) True LOC110497238
TU1055177 other downstream 748229 78467432 ~ 78474059 (-) True LOC110497224
TU1055178 other downstream 777147 78442928 ~ 78445141 (-) True LOC110497241
TU1055181 other downstream 780306 78441305 ~ 78441982 (-) True G927222
TU1055320 other downstream 788192 78429835 ~ 78434096 (-) True G927317
TU1055775 other upstream 37524 79274693 ~ 79281790 (-) True G927673
TU1056065 other upstream 134947 79372116 ~ 79372872 (-) True G927893
TU1056168 other upstream 318801 79555970 ~ 79557955 (-) True G927948
TU1056215 other upstream 348909 79586078 ~ 79587865 (-) False G927980
TU1056216 other upstream 348909 79586078 ~ 79587865 (-) True G927980

Expression Profile