RNA id: XR_005034496.1


Basic Information

Item Value
RNA id XR_005034496.1
length 164
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC118937102
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79266759 ~ 79266922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacttacctggcaagggagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055654 lncRNA upstream 72499 79193026 ~ 79194260 (+) True G927579
TU1055647 lncRNA upstream 92896 79173530 ~ 79173863 (+) True G927572
TU1055628 lncRNA upstream 95714 79170396 ~ 79171045 (+) True LOC110513571
TU1055627 lncRNA upstream 95888 79170396 ~ 79170871 (+) False LOC110513571
TU1055646 lncRNA upstream 100596 79165565 ~ 79166163 (+) True G927571
TU1055682 lncRNA downstream 9093 79276015 ~ 79292617 (+) True LOC118936978
TU1055688 lncRNA downstream 11102 79278024 ~ 79325667 (+) False G927607
TU1055692 lncRNA downstream 11165 79278087 ~ 79325667 (+) True G927607
TU1055697 lncRNA downstream 22787 79289709 ~ 79290213 (+) True G927612
TU1055710 lncRNA downstream 56719 79323641 ~ 79323982 (+) True G927624
XR_005034494.1 mRNA upstream 2492 79264104 ~ 79264267 (+) True LOC118937100
XR_005034493.1 mRNA upstream 4578 79262018 ~ 79262181 (+) True LOC118937099
XR_005034492.1 mRNA upstream 6664 79259932 ~ 79260095 (+) True LOC118937098
XR_005034491.1 mRNA upstream 8750 79257846 ~ 79258009 (+) True LOC118937097
XR_005034490.1 mRNA upstream 10836 79255760 ~ 79255923 (+) True LOC118937096
XR_005034497.1 mRNA downstream 2492 79269414 ~ 79269577 (+) True LOC118937103
XR_005034498.1 mRNA downstream 5147 79272069 ~ 79272232 (+) True LOC118937104
XR_005034499.1 mRNA downstream 7233 79274155 ~ 79274318 (+) True LOC118937105
XR_005034403.1 mRNA downstream 9083 79276005 ~ 79276168 (+) False LOC118936978
XR_005034454.1 mRNA downstream 11621 79278543 ~ 79278706 (+) True LOC118937056
TU1055659 other upstream 63778 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 201212 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 479196 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 736158 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1541706 77722229 ~ 77725053 (+) False LOC110510687
TU1055684 other downstream 14464 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 330723 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 460123 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 760080 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 1045022 80311944 ~ 80316569 (+) True G928335