RNA id: XR_005034403.1


Basic Information

Item Value
RNA id XR_005034403.1
length 164
RNA type mRNA
GC content 0.56
exon number 1
gene id LOC118936978
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79276005 ~ 79292617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacttacctggcaagggagacagcgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgctctcccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055654 lncRNA upstream 81745 79193026 ~ 79194260 (+) True G927579
TU1055647 lncRNA upstream 102142 79173530 ~ 79173863 (+) True G927572
TU1055628 lncRNA upstream 104960 79170396 ~ 79171045 (+) True LOC110513571
TU1055627 lncRNA upstream 105134 79170396 ~ 79170871 (+) False LOC110513571
TU1055646 lncRNA upstream 109842 79165565 ~ 79166163 (+) True G927571
TU1055688 lncRNA downstream 1856 79278024 ~ 79325667 (+) False G927607
TU1055692 lncRNA downstream 1919 79278087 ~ 79325667 (+) True G927607
TU1055697 lncRNA downstream 13541 79289709 ~ 79290213 (+) True G927612
TU1055710 lncRNA downstream 47473 79323641 ~ 79323982 (+) True G927624
TU1055712 lncRNA downstream 53662 79329830 ~ 79330294 (+) True G927626
XR_005034499.1 mRNA upstream 1687 79274155 ~ 79274318 (+) True LOC118937105
XR_005034498.1 mRNA upstream 3773 79272069 ~ 79272232 (+) True LOC118937104
XR_005034497.1 mRNA upstream 6428 79269414 ~ 79269577 (+) True LOC118937103
XR_005034496.1 mRNA upstream 9083 79266759 ~ 79266922 (+) True LOC118937102
XR_005034494.1 mRNA upstream 11738 79264104 ~ 79264267 (+) True LOC118937100
XR_005034454.1 mRNA downstream 2375 79278543 ~ 79278706 (+) True LOC118937056
XR_005034427.1 mRNA downstream 4528 79280696 ~ 79280859 (+) False LOC118937004
XR_005034426.1 mRNA downstream 6451 79282619 ~ 79282782 (+) True LOC118937003
XR_005034413.1 mRNA downstream 8322 79284490 ~ 79284653 (+) True LOC118936989
XM_036934114.1 mRNA downstream 78281 79354449 ~ 79431768 (+) False LOC110516120
TU1055659 other upstream 73024 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 210458 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 488442 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 745404 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1550952 77722229 ~ 77725053 (+) False LOC110510687
TU1055684 other downstream 5218 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 321477 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 450877 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 750834 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 1035776 80311944 ~ 80316569 (+) True G928335

Expression Profile