RNA id: TU1055682


Basic Information

Item Value
RNA id TU1055682
length 402
lncRNA type read_through
GC content 0.49
exon number 2
gene id LOC118936978
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79276005 ~ 79292617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcaagggagacagcgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggaAAGGAGAGAAGCTTCCTTTCAATCAAATGACCAATCCAAACTAatctgccaaactaaccctgattcagatgaccatcctacccatgctagattacggagacgtaatttatagatcggcaggtaagggtgctctcgagcggctagatgttctttaccattcggccatcagatttgccaccaatgctccttataggacacatcactgcactctatactcctctgtaaactggtcatctctgtatacctgtcgcaagacccactggttgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055654 lncRNA upstream 81755 79193026 ~ 79194260 (+) True G927579
TU1055647 lncRNA upstream 102152 79173530 ~ 79173863 (+) True G927572
TU1055628 lncRNA upstream 104970 79170396 ~ 79171045 (+) True LOC110513571
TU1055627 lncRNA upstream 105144 79170396 ~ 79170871 (+) False LOC110513571
TU1055646 lncRNA upstream 109852 79165565 ~ 79166163 (+) True G927571
TU1055710 lncRNA downstream 31024 79323641 ~ 79323982 (+) True G927624
TU1055712 lncRNA downstream 37213 79329830 ~ 79330294 (+) True G927626
TU1055834 lncRNA downstream 45521 79338138 ~ 79338891 (+) True G927718
TU1055846 lncRNA downstream 82900 79375517 ~ 79376706 (+) True G927729
TU1055854 lncRNA downstream 103210 79395827 ~ 79396244 (+) True G927737
XR_005034499.1 mRNA upstream 1697 79274155 ~ 79274318 (+) True LOC118937105
XR_005034498.1 mRNA upstream 3783 79272069 ~ 79272232 (+) True LOC118937104
XR_005034497.1 mRNA upstream 6438 79269414 ~ 79269577 (+) True LOC118937103
XR_005034496.1 mRNA upstream 9093 79266759 ~ 79266922 (+) True LOC118937102
XR_005034494.1 mRNA upstream 11748 79264104 ~ 79264267 (+) True LOC118937100
XM_036934114.1 mRNA downstream 61832 79354449 ~ 79431768 (+) False LOC110516120
XM_036934115.1 mRNA downstream 61832 79354449 ~ 79431818 (+) False LOC110516120
XM_036934116.1 mRNA downstream 61837 79354454 ~ 79431768 (+) True LOC110516120
XR_005034248.1 mRNA downstream 113216 79405833 ~ 79407695 (+) False LOC118936794
XR_005034250.1 mRNA downstream 113216 79405833 ~ 79407695 (+) False LOC118936794
TU1055659 other upstream 73034 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 210468 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 488452 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 745414 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1550962 77722229 ~ 77725053 (+) False LOC110510687
TU1055895 other downstream 305028 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 434428 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 734385 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 1019327 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 1529047 80821664 ~ 80830655 (+) False LOC110515606

Expression Profile