RNA id: XR_005034427.1


Basic Information

Item Value
RNA id XR_005034427.1
length 164
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC118937004
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79218822 ~ 79318667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacttacctggcaaggcagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgatctcccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055654 lncRNA upstream 86436 79193026 ~ 79194260 (+) True G927579
TU1055647 lncRNA upstream 106833 79173530 ~ 79173863 (+) True G927572
TU1055628 lncRNA upstream 109651 79170396 ~ 79171045 (+) True LOC110513571
TU1055627 lncRNA upstream 109825 79170396 ~ 79170871 (+) False LOC110513571
TU1055646 lncRNA upstream 114533 79165565 ~ 79166163 (+) True G927571
TU1055697 lncRNA downstream 8850 79289709 ~ 79290213 (+) True G927612
TU1055710 lncRNA downstream 42782 79323641 ~ 79323982 (+) True G927624
TU1055712 lncRNA downstream 48971 79329830 ~ 79330294 (+) True G927626
TU1055834 lncRNA downstream 57279 79338138 ~ 79338891 (+) True G927718
TU1055846 lncRNA downstream 94658 79375517 ~ 79376706 (+) True G927729
XR_005034454.1 mRNA upstream 1990 79278543 ~ 79278706 (+) True LOC118937056
XR_005034403.1 mRNA upstream 4528 79276005 ~ 79276168 (+) False LOC118936978
XR_005034499.1 mRNA upstream 6378 79274155 ~ 79274318 (+) True LOC118937105
XR_005034498.1 mRNA upstream 8464 79272069 ~ 79272232 (+) True LOC118937104
XR_005034497.1 mRNA upstream 11119 79269414 ~ 79269577 (+) True LOC118937103
XR_005034426.1 mRNA downstream 1760 79282619 ~ 79282782 (+) True LOC118937003
XR_005034413.1 mRNA downstream 3631 79284490 ~ 79284653 (+) True LOC118936989
XM_036934114.1 mRNA downstream 73590 79354449 ~ 79431768 (+) False LOC110516120
XM_036934115.1 mRNA downstream 73590 79354449 ~ 79431818 (+) False LOC110516120
XM_036934116.1 mRNA downstream 73595 79354454 ~ 79431768 (+) True LOC110516120
TU1055659 other upstream 77715 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 215149 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 493133 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 750095 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1555643 77722229 ~ 77725053 (+) False LOC110510687
TU1055684 other downstream 527 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 316786 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 446186 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 746143 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 1031085 80311944 ~ 80316569 (+) True G928335

Expression Profile