RNA id: TU1055665


Basic Information

Item Value
RNA id TU1055665
length 759
lncRNA type read_through
GC content 0.45
exon number 2
gene id LOC118937004
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79218822 ~ 79318667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTAAACAGACAAAGTGTGGCAGATGAACTTCCTCCAGTTCACCTAACTCCATAGTGATGTCCAGCAATGGACCACCTTGTGTGTACTGCATGTCTTTCAGAAGTTGACTGTAGGGTTCCCAGTTCCTGAAGTGATACTTCAGAAtgacatctctctcacacagccaGCGGAGCCCAGACACTGTGCACTCATAACTCCCTTTGGGTGTCCTGTGCCTTATGGCAACAACAAGATGTGGTAGAGAGGGTCAATGGTCAAATGGAGAGGTTGGATTAGAAGACTATTCCCAAAGGTAATGGGGAAATACActggcaaggcagacaccgtgatcacgaaggcggttcacccagggcgaggctcagccattgcactccggctgtgctgacccctgcgaatttctcaaatgtggaaatctcgattgcataatttctggtagtgggggactgcgttcgcgatctcccctgatcttgatgttaaaaataatggaggaatgtgttaataaattcggagttctattgagtttcgtgttgagaaggagattttttacttatcagatgaatgactggggtctgtttataagtcaactaaaggcctcagagatacatttctgtcttctgataacccggatgtgtgtgatatgttattgtagcactggtgattatgcctgtcatgtcctgataatgtcaaggaaaaggcctacttgtgaatggatcattttgtgccctcaggacgtaatgtggattgaggtattttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055654 lncRNA upstream 24562 79193026 ~ 79194260 (+) True G927579
TU1055647 lncRNA upstream 44959 79173530 ~ 79173863 (+) True G927572
TU1055628 lncRNA upstream 47777 79170396 ~ 79171045 (+) True LOC110513571
TU1055627 lncRNA upstream 47951 79170396 ~ 79170871 (+) False LOC110513571
TU1055646 lncRNA upstream 52659 79165565 ~ 79166163 (+) True G927571
TU1055697 lncRNA downstream 8557 79289709 ~ 79290213 (+) True G927612
TU1055710 lncRNA downstream 42489 79323641 ~ 79323982 (+) True G927624
TU1055712 lncRNA downstream 48678 79329830 ~ 79330294 (+) True G927626
TU1055834 lncRNA downstream 56986 79338138 ~ 79338891 (+) True G927718
TU1055846 lncRNA downstream 94365 79375517 ~ 79376706 (+) True G927729
XR_005034247.1 mRNA upstream 9782 79207866 ~ 79209040 (+) True LOC118936792
XM_036934105.1 mRNA upstream 47777 79167704 ~ 79171045 (+) False LOC110513571
XM_036934102.1 mRNA upstream 54148 79159521 ~ 79164674 (+) False LOC110513572
XM_036934103.1 mRNA upstream 54148 79159522 ~ 79164674 (+) False LOC110513572
XM_036934104.1 mRNA upstream 55762 79159507 ~ 79163060 (+) False LOC110513572
XR_005034426.1 mRNA downstream 1467 79282619 ~ 79282782 (+) True LOC118937003
XR_005034413.1 mRNA downstream 3338 79284490 ~ 79284653 (+) True LOC118936989
XM_036934114.1 mRNA downstream 73297 79354449 ~ 79431768 (+) False LOC110516120
XM_036934115.1 mRNA downstream 73297 79354449 ~ 79431818 (+) False LOC110516120
XM_036934116.1 mRNA downstream 73302 79354454 ~ 79431768 (+) True LOC110516120
TU1055659 other upstream 15841 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 153275 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 431259 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 688221 78520032 ~ 78530601 (+) True LOC110497229
TU1054174 other upstream 1493769 77722229 ~ 77725053 (+) False LOC110510687
TU1055684 other downstream 234 79281386 ~ 79284144 (+) True G927606
TU1055895 other downstream 316493 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 445893 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 745850 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 1030792 80311944 ~ 80316569 (+) True G928335

Expression Profile