RNA id: XM_036934125.1


Basic Information

Item Value
RNA id XM_036934125.1
length 9880
RNA type mRNA
GC content 0.56
exon number 67
gene id LOC110511504
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79443387 ~ 79574541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTGTCACAGGAGCTCCCACTTCCTTGTGATTCTGTCCGGGCGCATCGAAGATGGCTTTGAGTATGGATGGTAGTGGCTACATCAACCAACGTCCTATTCATTTACCGAGGCTATTGTAAAGAAATAAAAGATTATCTTGCGTCGATAAGTGAAGTCGGAGAGGCGGCAGTAAAGTAGTCGCGAGTAGTGTTCATACGCTCGTCGTACTACGGACGGTTCGCTTCCCGGCGCGTGTTTttgatgttgtttttttgttgctccCCCCTGGTTGATTCCGATAGCTAGCTAACTGACACTTAAACGACAATTGTGTAAATATTAGCCACAGCTAAGCTAACCACTGCTGGTTAAAAAATGGCCACCATGGATAAATTAATGAAGGCCTTTGAATCTCTCAAGTCTTTCCAACAACAACAGGGACCGCCGACGGCCGAGGAGACGGCTCAAAAACAgaagaAAGAGCTGGCCACCACCAAAAAGGACAGAGTGGCCCACTGCCTGACCATATGTGAGAACATCATAGCCCAGTCTCTGAGAACGTCTCCGGAGTTCCAGAAGCTTCTGGGTATCGCCATGGAGATGTTCTTGCTGTGCAGCGACGACAGAGAGTCGGACGTCAGGATGGTGGCAGACGAGTGCCTGAACAAAATCATCAAAgcgcTGATGGACTCCAACCTGCCCAGACTTCAGCTGGAGCTCTACAAAGAAATTAAAAAGAATGGTGCCTCTCGGAGCCTGAGGGCTGCTCTTTGGAGGTTCGCTGAGCTAGCACACCTCGTCAGACCACAGAAATGCagacCGTACCTGGTGAACCTCCTCCCCTGTCTGACCAGGATCacgaagagacaggaggagactgTCCAGGAGACCCTGTCGGCTGCCGTGCCTAAGATCATGACTGTTCTGGGACACTTCGCTAATGACGGAGAggtcaagGTGTTGCTGAAGTCGTTTGTGGCCAACCTGAAGTCCACTTCTCCTACGATCCGTCGGACGGCCGCCAGCTCAGCGGCGAGTGTTTGTCAACACTCGAGACGGGCCTCCTACTTCTACACCTGGCTGCTCAACGTCCTGCTGGgtctgtTGGTCCCTGTCgatgaggaacatcctaaccaCCTGGTCCTGGGGGTGTTGTTAACCCTTCGCTACCTGATGCCTCAACTACAGCAACAGGACAGGACCACCAGCCTGAAAGGAAGCTTCGGAGTCATGAGGAAGGAGGCAGACTTACAGCCCACGCCTGAACAGCTACTGcaagtctATGAGTtgactctacactacagccagcATGGCGACCACAACGTGGTGACGGCCTCTCTGGAACTGATGCAGCAGATGTTCCGGACTCCTCCCCCGGAGCTACTGCACATGCTCATTACGCCCGGCAGCGTTCCGCACGCCAGCGTGTTCCGACGGGACGTGGAGAGACGCGCCCACTCCGGCAGCATCCTGGAGTTCATTGCCGGGGGCGGGTCTTCCTGTAATAGTCCACTCCTCCTCAGAAAACAGAAAGGCAAGATGCTgtcgggggaggaggaggggttggaggACGACCCTGAGAGGGCAGAGGTCACCACCGGGGCCTTTACAGCCTCTGTGGCGGGCGCCGACGCCACTGCACAGGTGGTCGACATCATTACCCAGCAGCCCCGCTCATCACAGCATGCTCTGCAGCCCGGCGACTCCGTGGACCTCGGTGGCGCCTCCTCGGAACAAGGAACGACTGCCCTCGGCACCTCCGGCGGCGAGGGAGGGGCGGGGACTCCCGAGTCGCCCAATGACAACGCAGCGGACGAGGACATGCTCAGCCACAGCTCCAGCGGGGCTAACGTTACCCCGGAAACGGCCGACTACGCCACGCCGGAGAACGCGGAGATGCCCGACGGGCCCCTGGTGGACCCCCTGGGAGACCCCTCGCTGCCCCCGAGCGCCGACTCGTCGCAGACCACCACAGAAGGGCCGGACTCGGCCGCCACACCTTCAGACGCCGCTGAACTCgtGTTGGACACCAGTGAGAGTCTGTATTCAGGGATGCAGATTGGAACTTTACaggatgaggaagaagagggagcCGTACCTTCATCACACCCTGAACCCTTCTCCCAGTCCGCACTGGctCTGAGTAGACCCCACCTCCTAGAGGGCAGAGGTCACAACAGACAGGCGTCAGACAGCAGTGTGGATCACTTCATACCAAAGGAGGAGCCAGCGGAGACCACAGAGCTGGAgaacaagCCATCGAGGATAAAGGGTCCGATTGGCCACTACACAGACCAAGGGGCGGAGCCTCTGGTTCACTGTGTACgactcctctctgcctccttcctGCTGACTGGACAGAAGAATGggctggTCTCTGATAAAGAGGTCCGTGTCAGTGTGAAGGTTCTAGCAGTCAGCTGTATCGGAGCAGCAGCCGCCCTTCATCCTGAAGTCTTCTTCAACTCTCTGTACCTGGAACCACTGGACGGAGAGACACAGCAggagcaGCAGTatatcagtgatgtgttgtgtctgGTTGCTCATGGAGACCCTCAGGTCAGAGGTGCTGCAGGGGTGTTGTGTGGCGCTGTTATCCACTCTGCTCTCAACAAGACACGTTACAACATACACACCTGGATGACCAGCGTTCACACCTCTACAGgTAACCCGTTGTCCCTGGTGGATCTAGTTCCTGTACTACAGAACACTCTCAAGGACGAGTCCTCTGTCACCTGTAAGATGGCCTGCTCTGCAGTCAGGcatTGCATCATGACTCTTTGTAGCAGTACTCTGAGTGAGTTGGGTCTGCATCTCCTGGTTGACCTGCTGACCTTAAAGGACTGTTCCTATTGGCTGGTCAGGACGGAACTCCTGGAAACTCTGGCAGAGATAGATTTCCGGTTGGTGAACTTCctggagaagagaacagagagttTACACAAAGGAGAGCATCACTACACTGGGttgcTAAGGttacaggagagagtgttgaatGGCGTTGTGATTCATTTGTTGGGAGACGAAGACCCTCGAGTACGACACATAGCCGCTGCTACTGTCAGCAGgCTGGTCAGTGTGTTGTTCTATGAGTGTGACCAGGGTCAGGCTGACCCGGTGGTGGCTATAGCCAGAGACCAGAGCTCTGTGTATCTACAGTTACTGATGCATGAGACACTACCACCTTCACACTTTACTGTCTCTACCATCACCaggacGTATCGTGGTTATAACCTGTCTCAGGGAGTGTCAGACGTCACTGTGGAGAATAACTTGTCAAGAGTCGTCTCTGCGGTGTCCCACGCTCTCACCTCCTCTACGTCACGGGCCCTcactTTCGGCTGCTGTGAGGCGCTGCATCTTCTGACCACCACCTACCCAGCATGCACCTGGAGTACGGGCTGGCACTGTGGTTACGTCAGCTCCACCGTCACACACCCCAACCGATCTAACCTCAACCGCTCCCGGGCACgctcacacagcctctctcagcccggctcaggcccattagaggaagggaagaggagtctaacagTAGGGATGGCTAACATGATGAtgtctctgctgtcctctgcctGGTTTCCTCTGGACCTCTCTGCTCACCAAGATGCTCTGCTGCTGGCCGGGAACCTGCTCGCTGCGACGGCTCCACAGTGTATGTGTAGTCCCTgggctggggaggaggagggagggccgGTCCCCGGTAAGACAGAGGAGCCCTGGGCAGCGGTGGGAGAGCGCCCCCTGGTGGTCCTGGTGGAACAACTCTTCTCTCACATCCTCAAGATACTCAACATCTGTGCCCACGTGCTGGACGACACGCCGCCCGGACCCGccgtcaaggccaccctgccgtccctagcCAACGCTCCCTCCCTCAGCCCCATCAGAAGGAAAGGCAAGGAGGTAGCAGAGCCAAGCACCATTCCCATGAGCCCTAAGAAAGGCAGCGAGACCAACACTGgcaggccagcggaCAGCTCGGGGTCCACGGCTAACGTCAACAAGTCCACAACCCTGGGAAGCTTCTATCATCTACCCACCTACCTCAAACTGTACGACGTCCTCAAAGCTACACACACCAACtataagGTTACGTTGGACCTCCACAGCACCAACGAGAAGTTCGGAGGGTTCCTGCGTTCTACGCTGGACGTTCTGTCTCAGCTGCTAGAGATGGCCACGCTGCACGACATCGGAAAGTGTGTGGAAGAGATCCTCAGCTACCTGAAACTCTGCTTCTCCAGAGAACCTCTGATGGCCACGGTCTGTGTTCAACagTTATTGAAGACGTTGTTTGGTACCAACCTAGCCTCCCAGTACGAGGGGGCCCAGGGCGGTCCTAGTCGATCCCAGGGGAAGGCTCTCCGTCTGGGCTCGTCCAGCCTGAGACCTGGCCTCTATCACTACTGCTTCATGGCCCCCTACACACACTTCACCCAGGCCCTGGCCGACGCCAGCCTCAGGAACATGGTGCAGGCTGAGCAGGAGCAGGACGCGTCAGGGTGGTTTGATGTAATGCAGAAGGTGTCCAACCAGCTGAGATCCAGTATCACCAACGTGaccaaacagagaggagacaagAATGCGATCCACAACCACATCCGTCTGTTTGAACCTCTGGTGATCAAGGCTCTGAAACTGTACACCACCTCCACCTCTGTAGCGCTGCAGAGACAGGTCCTAGACCTGCTGGCGCAGCTGGTACAGCTACGAGTCAACTACTGTCTGCTGGACTCGGACCAGgtgtTCATAGGTTTTGTGCTGAAGCAGTTTGAGTACATTGAGGTGGGACAGTTCAGagattcTGAGGCGATCGTCCCCAACATATTCTTCTTCCTGGTTCTGTTGTCGTACGAGCGGTACCACTCCAAACAGATCATCAGCATCCCAAAGATCATTCAACTGTGTGATGGCatcatggctagtgggaggaAGGCTGTCACACATGCCATCCCAGCCCTGCAGCCTATAGTCCATGACCTGTTTGTTCTGAGAGGCTCCAACAAGGCTGATGCTGGGAAGGAGCTGGACACCCAGAAAGAGGTGGTGGTCTCCATGCTGCTGAGACTCATACAGTACCACCAGgTGCTGGAGATGTTCATCCTGGTCCTCCAGCAGTGTCACAAGGAGAACGAGGACAAGTGGAAGAGACTGTCCAGACAGATCGCTGACATCATCCTGCCCATGATAGGAAAACAACAGATGCACCTGGACTCCCCTGAGGCTCTGGGAGTGTTGAACACTCTGTTTGAGACGgtcgctccctcctctctccgccCGGTAGATATGCTGCTGAAGGGAATGTTCACTACACCTGCTACCATGgCTAATGTCAACACAGTTCAGCTGTGGGTGTCAGGTGTCTTGGCTGTCCTCCGAGTCCTCATCTCTCAGTCCACTGAAGACATAGTCCTCTCTCGTGTCCAcgagctctccctctctcctctcctcctctcctgtcccacCATCCGACGTCTCCGTGACGACAGCAGCCTCTCGTCGCCCCCGCCACCGCCTCTGGCGACCTCGGCAACTGTCGCCCCCGACAACCAGGAGGCCAACGGAGAGCGGGTGCCGCCGGAGGAGACGTTTGCCAGgttccTACTCCAGCTAGTAGGAGTGATGCTAGATGACATCTCGACCAGACAGGTGAAGGTTGACATGACAGAAGAGCAACACACGTTCTACTGTCAACAGCTGGGGACTCTGTTAATGTGTCTCATACACATCTTCAAGAGTGgcatgTTCCGTAGGATCACAGCAGCAGCCACTCGTCTCCTGAAGGGTGATGCTGTTCTGGGTTCAGGTCCAGGGGTCAGTGGTGTCTTCTACCCCCTAGAGGGTCTTAATGCCATGGTGGGCTGCCTGGTGACCACACACCCCTCTCTGGTTCTACTCTGGTGCCAAGTCCTCCTCATCATCAACTACACCAACTACAGCTGGTGGACAGAGGTacaccagacacccaggagacagagtcTGTCCTGTACCAAGCTGCTGAGCCCTCATTCatcaggaggggtggaggaggagagaccagaggcCAGACTGGCCATGTGTAACAGAGAGATCGTACGCAGGGGAGGACTCATTCTCTTCTGTGACTACGTGtgTCAGAACCTGCACGACTCGGAGCACCTGACCTGGCTGATCGTCAACCACGTCCGTGACCTCATCGACCTTTCCCATGAGCCTCCGGTGCAGGACTTCATCAGCGCCGTTCACCGCAACTCGGCCGCCTCCGGACTGTTCATACAGGCTATACAGTCACGTTGTGACAACCTCACTActCCCACCATGTTGAAGAAGACTCTCCAGTGTCTAGAAGGGATCCACCTGTCCCAGTCTGGTTCTCTGTTGATGCTCTACGTGGACAAACTACTGAACACTCCTTTCAGAGTCCTGGCTCGTATGGTTGATACTCTGGCCTGCAGGAGGGTGGAAATGCTGCTGGCTGAAACACTACAGaacagtttagtccagctgcCTGTGGAGGAACTGGACAGAATCCAGGAATACCTTCAGATCAGTGGACTAGCTCAACGGCACCAGAGGTTCTACTCCCTGCTGGACAGGTTCCGAGCCTCCGTTGCCGAGGACACCAGCAGCCCCTCCCCTCCTGTGACATCACACCCCCTGGATGGGGAACCGCCACCTGCCCCTGAACTAGTCAAGGCTGACAAGGAGTGGTATGTTGCCTTGGTGATGTCCCAGTGCTGTCTCCGTGGTGACGGGTCGTTCCTGGAGACAACGGAACTCCTGACCAAACTACCTCCTGACGACCTCTCAACCATCATGAGttgcaaggacttcaacctgtctctcctctgtccgtGTCTGAGTCTGGGGGTTCAGAGGTTAACCCGGGGTCAGGGGTCGTTGCTATTGGAGACGGCCCTGGCCGTGATGCTGGATCATCTGAGCCGGGTCACACAGCTACTTCCTGTTCCACACCGTTCCTTCCTGCCGCCGGCCAAACCTGACCCGGCCGAACCCTACTGGGACAACTTGGCTATCGTCTATGGTGAGGCTGGACTCTACCCGCGGGTGATGTCTCTGTGTAGAGCGCTGTCTCAGTATCTGCTGTGTGTGGGTCAGCTTCCTTCCCCTCTGCAAATCCCTGAAGACAAACAACATCTCATCACCACCTTCACCACCATGGCTACCGAGttggtgGTCTGGCGTGTTCTCCAGGACAGTGTTCCTCTGAGTGTTGACCTGCAGGGGgctctgtcctgtctgtgtctGGCCCTGCAACAACCCTGTGTCTGGAACACACTGTCTACAGCCCCGTAcaaaacacacacctgttctatCATACACTGTCTACGACTCCTCATCACTGCAGtgGCAGTAGGTCCAGGTGACCATCTGTTACATCCAGGGAGGAAGAGAACCACCGGGTCAGATGGTGATTCAGACCAGGTCCACTCTCCAAACACTGACAacgTGTGTGAGCGACGGTCGTGTGAGATCATGGCTGAGCTGGTGGAAGGTCTCCAGAGCGTTCTGTCTCTGGGTCACCATAGAAACAGCGGAATCCCAGCCTTCCTCACACCGATGCTCCGAAACATCATCATCAGTCTGTCCAGACTACCGCTGGTCAACAGCTACACTAGAGTCCCCCCCCTGGTGTGGAAGCTGGGCTGGTCCCCTCGGCCAGGGGGAGAGTTCGGTACCACCCTTCCTGAGATCCCTGTAGAGTTCCTGCAGGAGAAGGACGTGTTCAGGGAGTTCCTCTATCGCATCAACACACTGGGCTGGAGCAGTAGGACCCAGTTTGAAGAGACCTGGGCCACACTGCTGGGAGTTCTGGTCACTCAACCCATCTCTATGgaccaggaggaggagagggaacaggagGAGGACTTGGAGCGTACCCAGTTGAATGTGTTAGCGGTCCAGGCCATCACGTCTCTTGTTCTGAGTTCCATGATTCTCCCTACTGCCGGAAACcctactgtctcctgtctggaACAACAGCCGAGAAACAAGACCCTTAAAGTCCTGgacacacgGTTTGGCAGGAAGTTGTCAGTGATCAGAGGAGCCGTGGAGAGAGAGATCCAGGCCATGGTGTCGAAGAGAGacaacgtacacacacaccacccctaccACACCTGGGaccctgtcccctccctgtctgctgtctcaccagGTACACTGATCAGCCATGAGAAACTCCTGCTGcagatcaacacagagagagagatggggaacatggactacaaactgggacaggtgTCCATCCATTCTGTGTGGCTGGGGAACAACATTACCCCtctgagagaggaagagtggggtgAGGATGAGGAAGATGAGACTGATACTCCGGCCCCCGCCTCTCTTCCTACCTCTCCTATCAACTCCAgGAAGCATCGTGCAGGTGTAGACATCCACTCCTGTTCTCAGTTCCTATTGGAGCTCTACAGCCAGTGGCTCCTCCCCGGTTCCCCTAGCAACAGACGCACCCCTGTTGTGCTCATCAGCGAGGTGGTCCGATCGttgtTGGCGGTCTCTGACCTGTTCACGGAGCGTAACCAGTTTGACATGATGTTCACCACCCTGATGGAGCTGCAGAAGAGTCATCCTGCTGAAGATGAGATAATGAACCAGTACCTGGTACCAGCTCTCTGCAAGGCTGCTGCTGTCCTGGGCATGgacaAGGCGACCTCTGAACCTGTGTGTCGGGTGTTGGAGCTGACCCTGCACAGCACCCACCTCCCCAGCCGTATGGGAGCGCTGCACGGCCTGCTGTACGTACTGGAGTGTGACCTGCTGGACGACACAGTGAAACAGCTGGTACCTGCCGTCTCAGACTACATACTGAGTAACCTACGGGCCATAGCAcactgTGTGAACTTGCACAACCAGCAGCATGTCTTGGTGATGTGTGCTGTGGCCTTTTACATGATGGAGAACTACCCTCTGGATGTAGGAGCCGAGtttactgctggggttatacagATGTGTGGTGTGATGGTATCAGCCAGTGAAGACTCCACCCCCTCAGTGATCTACCACTGTGTGTTGCGTGGGTTGGAGCGCCTCCTGCTGTCGGAGCAGCTGTCTCGTATGGATGGAGAGGCACTGGTTAAACTGAGTGTCGACCGGGTTAACATGCCAAGCCCTCACAGAGCCATGTCTGCCCTGGGACTCATGCTCACCTGCATGTACACAGGCAAGGAGAAGGCCAGCCCTGGTCGCCCGGCCGGCGCTGTCGACCCTCAGGCCCCCGACAGCGAGTCTGTCATCGTTGCCATGGAGAGGGTCTCTGTGCTCTTCGACAGGGTCCGTAAGGGTTTACCCAGCGAGGCACGGGTGGTGGCCAGGATTCTTCCTCAGTTCCTGGACGACTTCTTTCCTCCGCAGGACGTCATGAACAAGGTCATCGGAGAGTTCCTGTCCAATCAGCAGCCTTACCCACAATTCATGGCTACTGTGGTCTACAAGgtGTTCCAGACCCTCCATGCTACAGGCCAGTCCAGTATGGTGACAGACTGGGTGttactgtctctgtctaactTTACCCAGAGAACCCCAGTTGCCATGGCCATGTGGAGTCTGTCTTGCTTCTTCATCTCTGCCTCCACCTCCCAGTGGGTCTCTGCCCTcctgcCCCATGTCATCAGCCGTATGGGTAAGAGTGAGGTGGTGGACATCAGTCTGTTCTGTCTGGTAGCCCTGGACTTCTACAGACACCAGCTGGATgaagagttggaccgcagagccTTCCAGTCTGTCTTCCAGACCGTGGCCTCGCCTGGCAACACCTATCAGCAGCTACTGGACTGTCTGCAGAGTATCCACCAAGACACATCACtctgagagagagatgtagcccCTATCACCAGacatcacacagagagaggggggggcagagtgagatggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055863 lncRNA upstream 1888 79441255 ~ 79441499 (+) True G927745
TU1055825 lncRNA upstream 3777 79439383 ~ 79439610 (+) True LOC118936795
TU1055808 lncRNA upstream 4283 79438036 ~ 79439104 (+) False LOC118936795
TU1055819 lncRNA upstream 6217 79435521 ~ 79437170 (+) False LOC118936795
TU1055827 lncRNA upstream 8478 79433116 ~ 79434909 (+) True G927711
TU1055810 lncRNA downstream 198 79574739 ~ 79575950 (+) False G927700
TU1055811 lncRNA downstream 198 79574739 ~ 79575950 (+) True G927700
TU1055914 lncRNA downstream 67766 79642307 ~ 79646510 (+) False G927782
TU1055917 lncRNA downstream 68438 79642979 ~ 79648095 (+) True G927782
TU1055918 lncRNA downstream 76627 79651168 ~ 79651460 (+) True G927783
XR_005034252.1 mRNA upstream 3766 79436891 ~ 79439621 (+) False LOC118936795
XR_005034249.1 mRNA upstream 35161 79405833 ~ 79408226 (+) False LOC118936794
XR_005034248.1 mRNA upstream 35692 79405833 ~ 79407695 (+) False LOC118936794
XM_036989401.1 mRNA downstream 5565 79580106 ~ 79581616 (+) True LOC118966659
XM_036934128.1 mRNA downstream 9533 79584074 ~ 79703116 (+) False LOC110516173
XM_036934130.1 mRNA downstream 10394 79584935 ~ 79702031 (+) False LOC110516173
XM_036934131.1 mRNA downstream 10394 79584935 ~ 79702031 (+) False LOC110516173
XM_036934127.1 mRNA downstream 10394 79584935 ~ 79703116 (+) False LOC110516173
TU1055684 other upstream 159243 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 240406 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 377840 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 655824 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 912786 78520032 ~ 78530601 (+) True LOC110497229
TU1055895 other downstream 23104 79597645 ~ 79600772 (+) True LOC110514189
TU1055948 other downstream 152504 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 452461 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 737403 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 1247123 80821664 ~ 80830655 (+) False LOC110515606

Expression Profile