RNA id: XM_036934130.1


Basic Information

Item Value
RNA id XM_036934130.1
length 5240
RNA type mRNA
GC content 0.55
exon number 22
gene id LOC110516173
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79584074 ~ 79703116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAGCACGGGTGGATGCACTTTCTAGGTTGTATGTATGGATATTTTTTTTGACCAGCAATTTACGGACAATAATTACAAAGTTTGTAAAACTATCTTTATATTCATTATAAACACAAAGACTGAAGCCTAAATGACGACAGTGGAGTGCTAGTGATACAATTAACAACTTGTCATTTTTTTCCGTTATCGTCTTAGTTTGTTAGATACGCTTGCTATGGCTACCTAGCAAGCTACTtgtagccagctaacgttaactcAGTTAGCTCTCTATTCTCGTCCTCTCATGCAAAACAAGCTGCTAAGCTTAGCTAGTTCTCTCTTTGACTAAGTTTAGCTCACTTATAGGTTTATCAGCAGTTAGCAAACATAgctagagggtgaggagaggaggctcTCTTGTTGCCACGCAACTGTATGACCCACTGTCTTCAACACCTGTTGGAAAGGTGACCCCTGCTTGACCTGTGACAAGTCACATCATCCACTGAGAGTGGCACCAGCATGGCAGGGCTGGCGTTAGAGTGGAGGGGCTGACGTCATGCTCTCACCCTCCTGACACATTTTTTAGAAAGCCCTCAACActagaacgagagagggaggaaaagccttagagggagacagacagcccTTGACAgtgaaacgagagagagagaggagagagagagagagaggatagagaagggaggagaggagagagattaaGCCTCATCAAAAGAAACAACAGTTCTCGTTCACAATGCATCTCATTGACTTACCATGCCAGTAAAGCTCATTGAATGGAATTGAGAAACTCACATGAGTCTTTtcaacctctctcctcttccctggtTGTTGTTCTAGGCCCAAATTACaatatgttctcagtcaacataCCTGGTATCATAATGGTTGGATAAATAACATCAGTTAACTTACCTGGTAACATAAGGGTTGGATAAATAACATCAGGCAACTTACCTGGTAACATAAGGGTTGGATAAATAAcatcagtcaacttacctggtaacaTAAGGTTTGGATAAATCACTTCAGTCAACCTACCTGGTAACATAAGGGTTGGATAAATTACATTAAATAACAGAACAACGAGAGTCAAAACAATGTTCAGACAGACGGACACCTCGTCCAAGAGACGTCATGGAGGACGTGGGGGTCTCACAGCCTTACCCTCGCCTCCTCACCCCCACCAGGGTGGGCGTATCCGGGGGGTGGAGGTGGCCCGCGGGAGGGCAGGCTATGGGTTCACCCTCTCTGGCCAGGGCCCCTGTGTCCTCAACTGCATTCTAAAAGGAAGTCCGGCGGACTACGTGGGTCTCCGCTCCGGTGACCACATCCTGTCCGTGAACGACATCAACGTCTCCGGGGCGTCGCACGAGGACGTCGTCAAGCTGATTGGCCGATGCACGGGGGTTCTGCTACTGGTCGTCGCCGAGGGAGACCGGGGTGGCCGTCGTCACGGACACGGCGGTACCAACCGCAACCGTCGCCACGGGAACAATTCGGGAAGTCCAGCCGGAGGAGCGGCAGCCGCCGCGGACTCGTGCTCCAGCGACGAGGAGTTGTGTGGTTTCCATAACAGCAGCAGCGGAGGAGGAAACAACAAAAACGTGAAGCCTGGTTCCCGTGGTAACAGCGCCAGCGGAGGCggtgtaggaggaggaggaggaggaggagggggtggtggcTGGTTCAAGCCCAAGCTGGACTCTAAGACCCTGGGTATTAACAGGGCAGAGAGGGTGGTGGCGGAGATGCAGTCTGGAGGAATATTCAACATGATCTTTGACAACTCTTCACACTCCTCCAGCAGCTCAGAGAAAGACAGGGTCatcgctcctcctcctcctcctccccgtgCCTCCTCTTCCTCGTCTGCGTCGGCCAAGCCTGCGAGGCCCCTGTCAGAGCCAGAGTTCCCCCCGTACCATAAGGGGAGAGGCCGTTCCCACAGCAACCCCAACCTGCTCTCTGAGGAGGAGCTGGACAGGGTTCTAATGGCCGACGACTCAGTGTTCCTGGACGGGTTCCATCTGCAGGAGGCAGAGATccaggtgGAGGTGGAAGGGGAGGACTTCTCCCTGGAGCCCAGTGAGGGTATCCTGAACGTGGGTATGATGGTAGGGTACCTGGGCTCCATAGAGCTGGCCTCTACAGGAGCTAGTCTGGAGAGTGACAGTCTGCAGGCCATCAGAGGAAGCATGAGACGACTCAGGGCTGAACAGAAGATACACTCCCTGGTCCTCATGAAGGTGATGCACGATTGTGTGCGGCTGTGCAGTGACAGGAGACAGGTCCTTGCTACCTACCCCGCCGAAAAGCTAGCCTTCAGCGCCTGTTGCCCCGACGACCGACGCTTCTTCGGACTGGTCACCATGCAGGCCACCCGTGACGACGACGGTCACTATGGCAATGGTAACCGGGAGGAAGAGGGCGGGCTGAGGACTTCCTGTCACGTGTTCATAGTCGACCCGGAACTCTGTCATCACCAGgtCCATGTGGGTGTGGCCAGGAGGTTTGGGTTTGAGTGTACTCCTGATCCCGATACTGGAGGGTGTCTGGAGTTCCCCCCTACCTCCCAGCCTCTGCTCCAGTTTGTGTCTGTTCTCTACCGGGACATGGGGGTGAACATCGAGGGGGTCCGGGCGCGGGCGTTCGTTGATCCGGACAACGACCCACAGCAGAACCACAGCACCAGTAGCAACAGCGACAGCGGCATCGGTAACTTCCTGCCAGATGAAAAGAGTAACCGTGTCTTATTGGTTGACCTGGGAGGCCATAATCACAACCCCGGTCCACGCCACTGGGacagccctcctcctccctcgGCCCCGGGCTGGAACCAAGCCCCTCCCGGTGTCGTCCCTGGcccccctctcccacctcctcctccccctcacctcaACAACAGCTACCCACCCCCGCCTCTCCCCCCTGCCATCCCCCCTCGAGGGGCCCACTCCTCCCAGCCCTCACTCCACCACTACCCGCCAGGGAAGAGGGGAGGATCTGGAGGAGGAGCGGAGCAGAGCCTGGCCCCGCCCCAACACCATCAGTCTCAACGCTGGTTACCAGTCCACGTCCTGAGAGACTGGAGACAACCAGGCCAGGCAGGACAAACGCAGGGACAAGGAGGCCTGTGTAGTGATCAGGAGTCCTATGCTGAGTCAACGGATGGCTGGTCATCAACCAACTGTAGCACCCTCCCGCCACCCATGAACAAGATACCCGCGGATCGCTACAGGGCTCCGCTACCAGCCGGGGACCTGCCCCTGCCTCCGCAGCCTCCCGGGCTGGCCACGCAGAAGGATGAGTGGGCTAAGAAGCTGTTTGGGCCCGCGGCTGGAGAGAAAGGACTCAGAGAGCACAAGCAGAATGGGAAGAGACGCGGGAATGGGAAAGATGGGGAGAAGAAGgCTGGTCGGTTTAGAGGTCTGACGAAGGGcttccctcctctacctcagCGCTCTTCGGGAAGGCGATCCTTCGGCCGCATTAGCCTGGCACGCTCGCTGGATGACCTggagAAAACCCTGAACTGTGAGGGAGCTACGGAAGgaTCTGCTGTGGTCTCTGATGGAGagctGAACAGTGTTGACCTACAGGGCTGTGGTAGTGACAACAGTCTGAACAGTAATGCTAGTCTTCCCAGTGTCCAGTGCCATCGACGTCACACAGAGAGACGGGTGGCCAGCTGGGCGGCCTGCTTTGAGAGACTGCTGCAGGACCCGGTCGGAGTCAGATACTTCTCaGAGTTCCTGAAGAAGGAGTTTAGCGAGGAGAATATTGTGTTCTGGCAGGCCTGTGAGTTCTTCAGCCATGTCCCCGACAACGACAAGAAACAGttaTCTCAGAGAGCTAGACAGATCTATAACAGTTATTTATCCAGTAAGGCCACTACGCCGGTCAACATTGACAGTCAGGCCCAGCTGGCAGACGATATCCTCAACGCTCCCAGACCAGACATGTTTAAGGAACAACAACTACAgatctTCAACCTGATGAAGTTTGACAGCTATACTCGCTTCCTGAAGTCCCTCCTGTATCAGGAATGTATGTTAGCGGAGGTGGAGGGGAGGCCTCTACCAGACCCCTACCACATACCCAGCTCTCCTACCTCCAAACACAGTACCGGGTCAGATAGATCCACACCCaagaagGAGGACAAGAAGACTAAGTCGGGCCGCTCTCtgaacgaagagagagagagggatgagtgcgGAGGAGATAAGAAGAAAGGCATGTTCTTTTCGTGGTCACGGAACCGGAGCTTCGGGAAAGGACCCAAGAAACGGGATCTGGCAGACATCAACTACAACTTCTCGGGCAGTAACGGGCGTAGGGAATCACAAGGCTCTCTGTCATCCGGAGCCAGTCTGGAACTGGGAACGTCCGGATCTGGAAAGAACGAGggtggttctatggagagagacagagagcgaggcgGTGACTCTGTAACCCTGAGACAGTGTAACATCAACCTACCAGATGGGGCATGTTGCTCTGTGCCGGTCAGAGCTGGGTTCTCCATCAGAGAGCTGCTGGTGGGTCTCTGTGAGAAACTCTGTATCAACGTGGCAGCTGTAGACCTCTTCCTAGTCGGAGGGGAGAAGcctCTGGTTCTGGATCAGGACTGTATGACTCTGTGCtctcgggacctcagactggagaaACGGACTCTGTTCAGaCTGGACTTGGTTCCTATAAACAGGTCAGTGGGTCTGAAGGCTAAGCCCACTAAGCCGGTGACGGAGGTTCTGAGACCTGTAGTGGCCAAGTACGGCCTCCAGCTCAACGACCTGGTGGCCCGCATCAGTGGGGAGAAGGAGCCTCTTGACCTGGGTCTCCCCATCTCTAACCTGGATGGACTGAGAGTGGTGCTGGATGTAGCTGACAACACACCTGGGaaggACAAACCGATCGGGGCTCCGTCTAAAACCCATGCCCCGCCCCCTACGACTAGGAACCAATCAGCTACGAGCTCTTCCAGCTCATATCCAAAGCTCAGTGCAGCAGAGCAGACGACCAGCGAGGTCTGTTAGACAAGAGTGACCTGACGCTTCCCGACTTCCTCCGCCTCAGCCCTTCATCACcaccccttcctcttcctcccgcCTGCGTCACCCAGCATGGCCGCGGCGGTGGTAACCATGGCGATAGCGACAACTACGGCTACGGGGAAAACAGACGTCACGGCAACAAGGAAGGTGGAGGCGGTGGCTCGTTCCCTTTGAACACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055829 lncRNA upstream 7185 79555574 ~ 79577750 (+) True G927713
TU1055810 lncRNA upstream 8985 79574739 ~ 79575950 (+) False G927700
TU1055811 lncRNA upstream 8985 79574739 ~ 79575950 (+) True G927700
TU1055889 lncRNA upstream 22263 79562320 ~ 79562672 (+) True G927764
TU1055886 lncRNA upstream 38244 79545397 ~ 79546691 (+) True G927761
TU1055823 lncRNA downstream 101 79702132 ~ 79702511 (+) False LOC110516173
TU1055824 lncRNA downstream 101 79702132 ~ 79702775 (+) True LOC110516173
TU1055951 lncRNA downstream 14731 79716762 ~ 79717092 (+) True G927808
TU1055952 lncRNA downstream 18228 79720259 ~ 79720865 (+) True G927809
TU1055958 lncRNA downstream 22199 79724230 ~ 79724445 (+) True G927812
XM_036989401.1 mRNA upstream 3319 79580106 ~ 79581616 (+) True LOC118966659
XM_036934125.1 mRNA upstream 10394 79443387 ~ 79574541 (+) False LOC110511504
XM_036934133.1 mRNA downstream 25030 79727061 ~ 79782057 (+) False LOC110532970
XM_036934134.1 mRNA downstream 25030 79727061 ~ 79782057 (+) False LOC110532970
XM_036934135.1 mRNA downstream 25030 79727061 ~ 79782057 (+) False LOC110532970
XM_036934136.1 mRNA downstream 25030 79727061 ~ 79782057 (+) False LOC110532970
XM_036934137.1 mRNA downstream 25030 79727061 ~ 79782057 (+) False LOC110532970
TU1055684 other upstream 300791 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 381954 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 519388 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 797372 78775935 ~ 78787563 (+) True G927061
TU1054800 other upstream 1054334 78520032 ~ 78530601 (+) True LOC110497229
TU1055948 other downstream 25014 79727045 ~ 79757044 (+) True LOC110532970
TU1056528 other downstream 324971 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 609913 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 1119633 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1417534 81119565 ~ 81120877 (+) False G928731

Expression Profile