RNA id: XM_036934137.1


Basic Information

Item Value
RNA id XM_036934137.1
length 2544
RNA type mRNA
GC content 0.57
exon number 11
gene id LOC110532970
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79727045 ~ 79782057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacagtcagctgTTCTGAGCTATGTCAGAAGATGACGGATACAGTTGTAGTGGAAGGACAAGTTAAATTCAGAGATGGGAAAAAGTGGAAGAGTCGTTGGGTCGCGTTGCGGAAGCCGTCCCCAGTCGCAGactgcctctctctccaggtcTACCGGGATAAGTCCGATAAGGTCAGGGGTCGTCGTGAGCGGCTGCAGATGACCTTGGAGGGGATCTGTGGAGTGGAGCCGGGGTTAGGGTACGACGGGGTGGCCTACACCCTCACCATCCTCTGTCTGGGACACACAGTGGGACTGGGCTTCGACAGCAGAGAGGGGCTGACGGCATGGGACGCTAGGCTGAGATACAGCCTGGGAGAAGTCCACAGGTTCAGTGTAGGTGTTCAGCCAGGAACTAAGCTAGAGAGTGGTCCCGCCTCCTTGCACCTGTGCAACAACCTACTGGTCCTCACTAGGGACCTCCCGCCGGCCGTGATTGGCCAGTGGAAGCTGTCAGACCTGCGTCGCTATGGCGACGTGCCCAATGGCTTTGTTTTTGAGGGTGGCACTAGATGTGGATACTggGCTGGTGTGTTCTTCCTGTCCTGTTCAGAAGGAGAGCAGATCAGTTTCCTGTTTGACTGTATAGTCAGAGGCATCTCTCCTAGTAGAACACCTAGTGGCCTTAGACCTAACCTAccagATCCCAGTGCTAGCCGGtcctcctcagaggagaggatcAACCATGAAACATCGGATCTAGAGAGAAGACTCAGCATGCTGTCCCACAGCAGTAGACAGAGCAGTACAGCCTCCACCTCCAGTTACAGCACCTCCGTTGCCGGGGACGACCGCAGCagtatctcttcctcctcctccagccaATCAGACGCCAGCTACGGAAGCCACTTCCCTTTATGGCCAGAGCCAAAACGCCCCACTTCCTCAACCGAGACCCTGTCGGCCCCTCCCACTGCGAGGTCCTCGACCAATCTGGACGAGGATCTCTATAACGCTGTCATGAACCGCACTCCTTTCAAACCGCCTTCCCACCTTCGCAGTCTCCACGACAGCGGGCGCCAAAGCTCGTTGGACAGCGGGATAGGCGTCGCCACGGCCAGCAGCCAATCGTCTTACTCTGGGAGCTTTTCTTCCTGTACGGGCAGCCTGGACACAGCCAGtcaaggaggaggggaggagtttGGGTCTGTCCTTagtctacctccccctcttctctctctgcctcctctttctctacctccccctcctccctctctacctcctcttcctccacccattctacctcctccacctcctcctctgtccttaAGGACCCCTGAGCCcggccctctctccccccctactCCCTGCTCCTGCCTCCCGTCTTGCTCCTCATCCTCCAGGACTAGTGGTTGTAGCTCTGGCGCCCCCCGGTGGCAGCATGAGGAGTACCAGGCACCCAGCCTTCTCAGACTACAGTACGACAGCCCCAGGAACCTCCTGCACACCCTGGCCTTCAAGGATCCTCCACCCCAGGGAGGAGCATCCGAACTGGGCAGGGACAGGCAGCTCGGTGGGGATGGAGATCAAGGACAGATCCAGGGGCATGAGTGTCCTTCCCTTCCTTCCACCCCCACTGTGGCCTCTCTCCAGTGGGTAGAGACCCCGAGGCAGGCCCCCGTAGAAAGGCTCCTGTCCTGGAGCAGTGAGAGAGCGCCGCCTGTGGACAGTGGTGATCGGTGCAGCATCATGTACGCTCGGCTCACACCCAGACCTCTGCTGTTACCAGGCTGTCCAGTGTGTGGAGGAACCCAGAGTCATCATCCCTGTGTAGATCACAACTACATTACCCATGAGCAATGGTTCTCAGCTAGAAAGAGACATGTTACGCAGACAAACAGCCCTTCACATTCAGGGCTTTCCCCAACAccagATCCACCACCCCAGTGTAGAGAGGTGGTGCGGGGTGAGGCGGGCCTCTCTCACCCTCTAGAACCCTCCTATTCACCCCCACCTCCCCCCGGCACCATGACGCCAAGCAGACAGACCTCAGTCTCTGGCGGGGGCTCCACCACATACGCCCACATAGACATCACAGCCTCAGAGACAGctcagagagtagcagcagaacATGcccaggggagagaggacaggctgaTGGAGCTGGAGGAGAACACGcccaggggagagaggacaggctgaTGGAGCTGGAGGAGAACACGcccaggggagagaggacaggcggatggagctggaggagaaCACGCctaggggagagaggacagaaaggagAGGCAccctgcagtctctctctctgtctctctctgtctcactcactcacacacatctaCCTGAAATAATGAGTGTTTTCTTGTAAATAGTAACTGCTTTGTTTGCCAAGAGATTATTTATTAACTTGTTTTATATTtagccaccctctgccttgatgacagctttgcattctctcaaccagcttcacctggaatgctttgcCAACAGtcgtgaaggagttcccacatatgctgagcacttgttggctgcttttccttcactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1055958 lncRNA upstream 2616 79724230 ~ 79724445 (+) True G927812
TU1055952 lncRNA upstream 6196 79720259 ~ 79720865 (+) True G927809
TU1055951 lncRNA upstream 9969 79716762 ~ 79717092 (+) True G927808
TU1055824 lncRNA upstream 24286 79702132 ~ 79702775 (+) True LOC110516173
TU1055823 lncRNA upstream 24550 79702132 ~ 79702511 (+) False LOC110516173
TU1055945 lncRNA downstream 2365 79784422 ~ 79785699 (+) False G927804
TU1055946 lncRNA downstream 2836 79784893 ~ 79785699 (+) True G927804
TU1055994 lncRNA downstream 27157 79809214 ~ 79809431 (+) True G927842
TU1056001 lncRNA downstream 43725 79825782 ~ 79826393 (+) True G927849
TU1056007 lncRNA downstream 48342 79830399 ~ 79830749 (+) True G927851
XM_036934128.1 mRNA upstream 23945 79584074 ~ 79703116 (+) False LOC110516173
XM_036934140.1 mRNA downstream 100858 79882915 ~ 79895771 (+) False LOC118936797
XM_036934141.1 mRNA downstream 234900 80016957 ~ 80021704 (+) True LOC118936798
XM_036934146.1 mRNA downstream 571880 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 578970 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 844689 80626746 ~ 80651978 (+) False LOC110516989
TU1055895 other upstream 126289 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 442917 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 524080 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 661514 79052491 ~ 79065547 (+) True LOC110515636
TU1054938 other upstream 939498 78775935 ~ 78787563 (+) True G927061
TU1056528 other downstream 244945 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 529887 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 1039607 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1337508 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1337508 81119565 ~ 81120246 (+) True G928731

Expression Profile