RNA id: TU1056016


Basic Information

Item Value
RNA id TU1056016
length 1261
lncRNA type sense_over
GC content 0.45
exon number 6
gene id LOC118936797
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 79882915 ~ 79895771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggacacaaaATTAGACACAAATACAGCAAGTTTTTCTGGTAATACTTTGTGCTTCAGTGTCTTGTCAGTGGTGGAAGAGATACTCTGGAGCTGCTGCAGGAtgtctggggctgctgtgtgttctcctactggctgggatcataggcCTGTTTCTCTACCAGAGAAACCAATTGACCAGTTCCAACAccctgactgaagagagagaccagttacagaccTGCGGAAACAACCTtactgaagagagagaccagctacagactagCAACAACACCCCGAacgaagagagagaccagctacagactagCGACAACACGCTGACCAAAGAGAGAAACCagttacagaccagatacaacaccctgaccaaagagagagacaagctacagaccagatacaacaccctgaccaaagagagagaccagctacagactagatacaacatcctgaccaaagagagagaccagctacagaaagagacagaacgTCTGAAACAATCTTTAGTTGAGAAAGTTTGTCCGCGAGGATGGAAGAAGCTTGGTAGCAGGTGTTACTACGTCTCTACTGAGAAAAAATCCTGGGAGGAGAGCAGACAGGACTGCAGATATAGAGGAGCAGACCTGGTTGTCATCAAGAACCAAgaacaacagACATTTGTCAATTGGTTATGCGGGGTAAAGAACTATgtctggattggtctgactgactctgtttcTGAGGGGACCTGGAAATGGGTGGACTACACAACACTGACCACAAAGTAAGACATTAATGAATTCTGTGTCACTATGACATCACTGTCTGGAGAAGTAGGTTCAgagtggacagcctgattctcctacaggtattggaacagtggacagcctgattctgTGTGGTGTTTctcctacaggtattggaacagtggacagtctgattctgtgttgtttcttctacagttattggaacagtggacagtctgattctgtgttgtttcttctacaggtattggaacagtggacagtctgattctgtgtgttgtttcttctacaggtattggaacagtggacagcctgattctatgtgttgtttctcctacaggtattggaacagtaaAGAGCCTAATGGTGgaagagcagagaactgtgtGTATTTCTACTCCTGGTCATCAGACACAGGAGCTTGGTGGGACTATGACTGTTCCTATCAATACAGATGGATCTGTGAGAAATAGGATTCATCCTCGGTACCCTCTGAACTGCTAAATAAGATTATGCTAAGTACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056007 lncRNA upstream 58729 79830399 ~ 79830749 (+) True G927851
TU1056001 lncRNA upstream 63085 79825782 ~ 79826393 (+) True G927849
TU1055994 lncRNA upstream 80047 79809214 ~ 79809431 (+) True G927842
TU1055945 lncRNA upstream 103779 79784422 ~ 79785699 (+) False G927804
TU1056414 lncRNA downstream 33582 79928568 ~ 79928778 (+) True G928123
TU1056418 lncRNA downstream 35827 79930813 ~ 79932020 (+) True G928125
TU1056454 lncRNA downstream 59362 79954348 ~ 79954554 (+) True G928150
TU1056467 lncRNA downstream 85110 79980096 ~ 79980301 (+) True G928163
TU1056485 lncRNA downstream 98873 79993859 ~ 80007173 (+) False G928175
XM_036934133.1 mRNA upstream 107421 79727061 ~ 79782057 (+) False LOC110532970
XM_036934141.1 mRNA downstream 121971 80016957 ~ 80021704 (+) True LOC118936798
XM_036934146.1 mRNA downstream 458951 80353937 ~ 80358078 (+) True LOC110516353
XM_021573170.2 mRNA downstream 466041 80361027 ~ 80365186 (+) True LOC110497187
XM_036934152.1 mRNA downstream 731760 80626746 ~ 80651978 (+) False LOC110516989
XM_036934156.1 mRNA downstream 796032 80691018 ~ 80713764 (+) False LOC118936381
TU1055948 other upstream 132434 79727045 ~ 79757044 (+) True LOC110532970
TU1055895 other upstream 288706 79597645 ~ 79600772 (+) True LOC110514189
TU1055684 other upstream 605334 79281386 ~ 79284144 (+) True G927606
TU1055659 other upstream 686497 79200281 ~ 79202981 (+) True G927584
TU1055067 other upstream 823931 79052491 ~ 79065547 (+) True LOC110515636
TU1056528 other downstream 132016 80027002 ~ 80028219 (+) True G928206
TU1056700 other downstream 416958 80311944 ~ 80316569 (+) True G928335
TU1057129 other downstream 926678 80821664 ~ 80830655 (+) False LOC110515606
TU1057314 other downstream 1224579 81119565 ~ 81120877 (+) False G928731
TU1057315 other downstream 1224579 81119565 ~ 81120246 (+) True G928731

Expression Profile