RNA id: XM_036934170.1


Basic Information

Item Value
RNA id XM_036934170.1
length 4824
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110510686
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81373583 ~ 81386366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaTGAGTCCCAACTCTCATTGTTTTCCTACAGGTCAAACTCTGCTGACAGTCCAACAAGACATTAAGGCTAAACTGAAACACAAGTATCAACACATATCTGAAGGAATTGGACACCATGGAAACCAAAGTCTGTTCAAAGAcatctacacagagctctacatcacagagggtggaaGTGGAGGGctcaataatgaacatgaggttAGACAGATAGAGATGGCATCCAAGAAACAAACCACACAAGAGACACCAATCAAATGCAACGACATCTTCAAGCCTTTACCTGGACAAGACAAACCaatcagaactgtgctgacaaaaGGAAtcgctggcattggaaaaacagtctctgtgcagaagGTCATCCTTGACTGGGCAGAGGGAAAGGCAAATCAGGACGTTCATTTCATGTTTCCTCTTCCTTTCCGTGATCTGAACCTGAAAAAGGACCAATACAGTCTGATGCAACTTCTTTCCCACTACTTCCCAGAGCTGAAAGAGATTGACAGCATTGAAGATGGTGAAACCAAAACTGTTTTCATTTTTGATGGTCTGGACGAGTGTCGACTTCCTCTAGACTTCAAAAACAATGAGAAGTGCTGTGATGTCACGAAGCCAACCTCAGTGGACGTGCTGCTGACAAACCTCATCGAGAGGAATCTGCTTCCCTGTGCTCTCCTCTGGATAACCTCACGGCCGGCAGCAGCCAATCAGATCCCTACTGAgtgtgttgaccaggtgacagaggtgCGAGGGTTCAATGATCCACAGAAGGAGGAGTATTTCAGGAAGAAAATCACAGATCAGAATCTGGCCAATGAAATCATCAAGCACATGAAGACATCAAGGAGCCTCTACATCATGTGCCACATGCCAGTCTTCTGTTGGATATCAGCCACTGTCCTTGAGATGATACTGAACGAGGCAGAGAAGGATGAAGTCCCCAAAACTCTGACCCAGATGTACTCACACTTCATTCTCATCCAAATCATTGTGAAGAACAGGAAGTACAACAAAGCCACAGAGACAAACCCAAAGGAACTGTCTCAGTCAGACAAAGAGATGATCCTGAAACTGGCAAAACTGTCTTTCCAACAGCTGCAGAATGGCAACCTGATCTTCTATGAGGAGGACCTGAGAGATTGTGGTCTTGATGTCACAGAGGCATCAGAGTACTCAGCATTGTGTACAGAGATCTTTAAAGAAGAATCTTTGCTGTACCAAGACAAGGTCTACAGCTTTGTGcatctgagcattcaggagtttctAGCAGCAGTGCATGCTTTAGAATCATGTCTAGACAAGAAGGAAAATGTTTTCTCCCCCACTAGTGATGATGAAGAGAAGGAGTCAACCCAGTTGTCTGACTTACACAGGAGAGCAGTGGACCAGGCCTTGAAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggtctctcactggagtccaatcagaacCTGTTACGAGGCCTTCTGACACAGACAGGAGGTACAACACAGACCAATGAGGAAACAGTTGAGAGAACAGTCAGGTACCTTTCATACAACATCAAGGAGGAATCCTCACCAGAAAGGATCATCAACttgttccactgtctgaatgaacttGGTTCCAACTCTCTAGTTGAAGACATGCAGACCTCCCTGCGATCAGGAACTCTTTCAGAAACAAGACTAGAACCTGACCAATGTTCAGCCCTGGCCTACCTGTTACTGATGTcagaggaggtgctggaggagCTTGACCTGAAGACATACAACACAACAAAGGATGGTTATCAGAGGTTGCTGCCGGTAGTGAAAACCTGCAAGAGAGCACTACTGGTTGACTGTGAACTCACATATAAATCCTGTGAGACTCTGGCCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGAAGACagaggagtgaagctgctctgtGTTGGACTAACCAGTTCACTCTGCAGCATACAGATACTAGTacTGGCTGAATGCGAACTCACATATGAATCCTGTGAGACTCTGACCTCAGCTCTGCAGACACCAAACTCCCCCCTGAGAGAACTGGACCTCAGCTACAATGACCTGGAAGACAGAGGAGTGGAGCTGCTCTGTGTTGGACTAACCAGTCCACTCTGCAACATACAGACACTAGTTCTAGgtcagtgtggtctgacagagGGTTGCTGTTCAGATCTGGCCTCAGTCCTGAGTTCACCCAACTCACAACTGAAACAGCTGGAGCTGAGAGACAATGACCTGCAGGACTCAGGAGTTACACTgctgtctgctggactggaggatccagactgtaaactacaCACACTGGGgctgtcttgcTGTCTGGTCACGGAGGAGGGCTGTGCTGCTCTGTcttcagctctgaggtcaaacccctcccacctgaaagagctggacctgagctacaatcacccaggagactctGCAGGGGGCCTGCTTTCAGCTGCTCTGATGGATCCCACATATAAACTGATGAAGCTGAATGTGGATCATGGTGGAGAGTGCAGGTTGAAATCAGGGCCGAGGAAATATGCCTGTCATCTCACCCTGGACCCAGATACAGCACACCGAAACCTGATACTGTCTGAAGGGAACAGGAAGGTGACATTGGTTGAAGAGAAGCAGCATTATGAAGACCATCCAGAAAGATTTGATTGTCGTCCCGAAGTTCAATACCCTTCAATACCCTTTAATTGTCGTTACCAAGTTCTCTGCAGAGAAGGCTTATCTGGAGGTCATTATTACTGGGAGGTGGAGATGAATGGTGACAAGGCTGTCATTGGTGTGGCGTCCAAAGGAATGAAGAAGAAGGAATGGTCCTGCTGGTTATTCTGCTCTAATGATATATATATCTTTAGACATAGTGGATGCAACATCATCTGCAGATCCATCTCTGATCCAGATACTTTTCCTGTTTCTAAGAGAGTtggagtgtatctggactggccagcTGGTACTTTGTCCTTCTATAGTGTGTCCTCCTCTGGTACACTGACACACCTTCACACAGAACACGCCAGATTCACTGAACCCCTCTATCCTGTATTTGGTatttactcctcctcctcagtgacccTGTGTCAGATAGATGACCAACACATTCAGAGagaccatggtagAGAGAGTTGGATCAAgtctggacctgaggacaccagagaccatggtggagagagttggatcAAGTCTGaacctgaggacaccagagaccatggtggagagagttgtatCGAGCCTGAACCTGAGAACACCAGAGACCACGGTGGAGAGAGTTgtatcaagcctggacctgaggacaccagagaccatggtggagagtgtTGTATCAAGCCtagacctgaggacaccagagaccatggtggagagagttggatcaagcctggacctgaggacaccagagaccatggtggagagagttggatcaagcctggacctgaggacaccagtgACCATGGTGGAGAGTGTTGTATCAAGCCTGGACCTGAGAAATGGATTCCTCAGACCTGTAAGACTTGTGACCATGTTGAGGACTCCACACACTGGCTTCAGATTGAACCCTTGACTTCCACTGTCCAGGGAGTGACAATGTTCAGACACAGGACACCCAAAGGGAGTTATGAGTGCACAGTGTCTGGGCTCCGCtggctgtgtgagagagatgtcaTTCTGAAGTATCACTTCAGGAACTGGGAACCCTACAGTCAACTTCTGAAAGACATGCAGTACACACAAGGTGGTCCATTGCTGGACATCACTATGGAGTTAGGTGAACTGGAGGAAGTTCATCTGCCACACTTTGTCTGTTTAGGGACCAACCCTTCCCTGAGGAATGAGATGAAGATTCTTCATGTAGAGGAACATGGAGTGTCTTTAGAGGAAGTGCATGAGGTCACCAGATTCCATGTTAAGATTCTCCATCCCAAGTTCTCACCTATCGCTCTGATACTGAGATTACTGTCTTGGAACTTAGATGTCCACTGTGACGTGGTCCTCTATATGGCAGTAAAAAAGTCAACAGTCATTTCAAGGCTGTACCTGCTCCTCAGAAACTCCAGTCAGAAAGAGGCTGTTCAGGAACGGGAGAAAAATCAGGTGTCCAAAGGATTTTCAGAATTCGTCCTGTCAAGTCCAAACGGGTCCTTAAAGCTAAACAGTTGGTTTGCGTTCAAGAATCCCCTCTCCACTTCCATCAATCCAAAGGTGCAGTTTTATCAGGCTGAGGACATGAATCTGTCATATTGTATATGAATAACTGGAATGTCATTCTATttcactatttctctctctctctctctgtctctctctgttgtctcaaTCGTTGCACCATATGGCCTCCTACAGAAGATTCAGCTGTTACCTGCAGACACCACACCAAGCTGTTGTCAGATGATAATGGGAAACACAGGGGTGGACATTGAGATGGAGTTAATCGGGGATGATGAGAGGACAGTATGGAAATCAGTGTTATCAAAAGATGTGTACAGCAACGACTCTCATCCAACATCATTAACACTCCTTGGGATTCCTGCTGAGGAGTTTCTGAAGAAACACAGGGCTGAACTCATTCAGGGAGTCAAAAACACAAATCCAATAGCAGATGTTCTGCAGTCAAAATACATGATTGGTGATGAAGAGTACTCCAGAATAAAAGCTGAAACAACTGAACAGGAGCGAATGAGAGAACTACTGAACGCAGTCCTCCCTAAAGGACCAGAAGTGATGGGAGCTTGTCTCAAAGCTCTTAGTGAACATGAACACCATCTTGTTAAGTACTTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057475 lncRNA upstream 10404 81360793 ~ 81363179 (+) True G928846
TU1057344 lncRNA upstream 17466 81271764 ~ 81356117 (+) True G928756
TU1057441 lncRNA upstream 19354 81298367 ~ 81354229 (+) True G928830
TU1057455 lncRNA upstream 19977 81323533 ~ 81353606 (+) True G928840
TU1057383 lncRNA upstream 20744 81263442 ~ 81352839 (+) False G928782
TU1057495 lncRNA downstream 5347 81391713 ~ 81393673 (+) False G928853
TU1057496 lncRNA downstream 5347 81391713 ~ 81393673 (+) True G928853
TU1057336 lncRNA downstream 20357 81406723 ~ 81439976 (+) True G928750
TU1057387 lncRNA downstream 22820 81409186 ~ 81445032 (+) True G928784
TU1057509 lncRNA downstream 43963 81430329 ~ 81432413 (+) True G928865
XM_036934178.1 mRNA upstream 126232 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA upstream 126232 81241639 ~ 81247351 (+) False LOC118936811
XM_036934174.1 mRNA upstream 153186 81217975 ~ 81220397 (+) True LOC110530284
XM_036934161.1 mRNA upstream 359332 80942545 ~ 81014251 (+) False LOC110514786
XR_005034258.1 mRNA upstream 437522 80935213 ~ 80936061 (+) False LOC118936804
XM_036934187.1 mRNA downstream 100230 81486596 ~ 81506153 (+) False LOC110518956
XR_005034263.1 mRNA downstream 116843 81503209 ~ 81504564 (+) False LOC118936817
XR_005034264.1 mRNA downstream 116843 81503209 ~ 81504564 (+) False LOC118936817
XM_036934189.1 mRNA downstream 140148 81526514 ~ 81534991 (+) False LOC110513527
XM_036934190.1 mRNA downstream 140148 81526514 ~ 81534991 (+) False LOC110513527
TU1057354 other upstream 23252 81349536 ~ 81350331 (+) True G928765
TU1057346 other upstream 43234 81277039 ~ 81330349 (+) True G928757
TU1057265 other upstream 59835 81184885 ~ 81313748 (+) False G928705
TU1057339 other upstream 127757 81243094 ~ 81245826 (+) False LOC118936811
TU1057333 other upstream 131033 81239097 ~ 81242550 (+) False LOC118936811
TU1057519 other downstream 118309 81504675 ~ 81506482 (+) True LOC110518956
TU1057527 other downstream 140382 81526748 ~ 81529882 (+) True LOC110513527
TU1057514 other downstream 193019 81579385 ~ 81595737 (+) False LOC118936818
TU1057515 other downstream 208637 81595003 ~ 81595752 (+) False LOC118936818
TU1057517 other downstream 208637 81595003 ~ 81595737 (+) True LOC118936818

Expression Profile