RNA id: XR_005034263.1


Basic Information

Item Value
RNA id XR_005034263.1
length 976
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118936817
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 81503209 ~ 81504564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaggatatgaccagtgacttggtctatagagagtagaggagaggtccatcctcatagcagtgataggagagatcatgtgaggatatgaccagtgacttggtctatagagagaagaggagaggtccaTCCTCATAGCAGTGATAGGAGAGATCATGTGAGGAAAtgaccagtgacttggtctagagagagaagaggagaggtccaTCCTCATAGCAGTGATAGGAGAGATCATGTGATGATATGACAGAGCTGAGTGACTtagtgtatagagagaagaggagaggtccatcctcatagcagtgataggagagaccatgtgaggatatgacagagctgagtgcctatagagagaagaggagaggtccatcctcatagcagtgataggagagaccatgtgaggatatgacagagctgaGTGACTTAGAGAGGAGAGGTCCATCCTCATAGCAGTGATAGGAGAGATCATGTGATGATATGACAGAGCTGAGTGACTTAGAGAGGAGAGGTCCATCCTCATAgcagtgataggagagaccatgtgaggatatgaccagtgacttggtctatagagagaagaggagaggtccatcctcatagcagtgataggagagatcatgtgaggatatgacagagctgagtgacttatagagagtagaggagagGTCCATCCTCATAGCAGTGAGTGcctatagagagtagaggagaggtccatcctcatagcagtgagtgcctatagagagaagaggagaggtccatcctcatagcagtgagtgcctatagagagtagaggagaggtccatcctcatagcagtgagtgcctatagagaggaggggcCTAAAACAATGACATCATCTACCGTTtacctcgtaccatctaaacGGCATTGTTGTTAAATCACTGATATGGAAcataaactgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctctctatctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057550 lncRNA upstream 1023 81501668 ~ 81502186 (+) True G928896
TU1057541 lncRNA upstream 20396 81482607 ~ 81482813 (+) True G928889
TU1057539 lncRNA upstream 23866 81477952 ~ 81479343 (+) True G928888
TU1057534 lncRNA upstream 33351 81467730 ~ 81469858 (+) True G928885
TU1057533 lncRNA upstream 33502 81467730 ~ 81469707 (+) False G928885
TU1057542 lncRNA downstream 32288 81536852 ~ 81538212 (+) True G928890
TU1057525 lncRNA downstream 35344 81539908 ~ 81540515 (+) True G928877
TU1057521 lncRNA downstream 36332 81540896 ~ 81541253 (+) True G928873
TU1057528 lncRNA downstream 47647 81552211 ~ 81553026 (+) True G928880
TU1057559 lncRNA downstream 50417 81554981 ~ 81555967 (+) True G928903
XM_036934170.1 mRNA upstream 116843 81373583 ~ 81386366 (+) False LOC110510686
XM_036934178.1 mRNA upstream 255858 81241634 ~ 81247351 (+) False LOC118936811
XM_036934177.1 mRNA upstream 255858 81241639 ~ 81247351 (+) False LOC118936811
XM_036934174.1 mRNA upstream 282812 81217975 ~ 81220397 (+) True LOC110530284
XM_036934161.1 mRNA upstream 488958 80942545 ~ 81014251 (+) False LOC110514786
XM_036934189.1 mRNA downstream 21950 81526514 ~ 81534991 (+) False LOC110513527
XM_036934190.1 mRNA downstream 21950 81526514 ~ 81534991 (+) False LOC110513527
XM_036934192.1 mRNA downstream 54180 81558744 ~ 81615329 (+) False LOC118936818
XM_036934193.1 mRNA downstream 54180 81558744 ~ 81615329 (+) False LOC118936818
XM_036934194.1 mRNA downstream 112896 81617460 ~ 81672338 (+) False LOC118936819
TU1057347 other upstream 119834 81382209 ~ 81383375 (+) True LOC110510686
TU1057354 other upstream 152878 81349536 ~ 81350331 (+) True G928765
TU1057346 other upstream 172860 81277039 ~ 81330349 (+) True G928757
TU1057339 other upstream 257383 81243094 ~ 81245826 (+) False LOC118936811
TU1057333 other upstream 260659 81239097 ~ 81242550 (+) False LOC118936811
TU1057519 other downstream 111 81504675 ~ 81506482 (+) True LOC110518956
TU1057527 other downstream 22184 81526748 ~ 81529882 (+) True LOC110513527
TU1057514 other downstream 74821 81579385 ~ 81595737 (+) False LOC118936818
TU1057515 other downstream 90439 81595003 ~ 81595752 (+) False LOC118936818
TU1057517 other downstream 90439 81595003 ~ 81595737 (+) True LOC118936818

Expression Profile